Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2031 89.7 5e-13 seq108 84.2 2e-11 >seq2031 Length=37572 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||||| | ||||||||| ||||| ||||| |||||||| | || || || || || Sbjct 5084 AAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCTTTAACA 5143 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | || || |||| ||||||||||||||||| ||||| ||| Sbjct 5144 TTTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAGAGTCTTC 5203 Query 94994 ACAAAGATCTGCAT 95007 ||||| || ||||| Sbjct 5204 ACAAAAATTTGCAT 5217 >seq108 Length=252160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | || |||||| ||||||||||| ||||||||||| | || || || || ||| Sbjct 244133 AAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCTTTCACG 244074 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||||| ||||| || | || || || || ||||||||||||||| Sbjct 244073 TTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGAGTTTTC 244014 Query 94994 ACAAAGATCTGCAT 95007 || || || ||||| Sbjct 244013 ACGAAAATTTGCAT 244000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | || |||||| ||||||||||| ||||| || || | || || || || ||| Sbjct 244440 AAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCTTTCACG 244381 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||||| ||||| || | |||||||| || || ||||| || ||| Sbjct 244380 TTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGCGTCTTC 244321 Query 94994 ACAAAGATCTGCATGC 95009 || ||||||||||||| Sbjct 244320 ACGAAGATCTGCATGC 244305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255426362240