Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2247 176 7e-40 seq283 163 4e-36 seq4404 158 2e-34 seq2470 158 2e-34 seq835 158 2e-34 seq1353 154 2e-33 seq129 154 2e-33 seq2183 140 5e-29 seq2146 134 2e-27 seq194 93.3 7e-15 seq83 93.3 7e-15 seq87 82.4 1e-11 >seq2247 Length=31752 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | | || |||| |||||||| |||||||||||||| ||||| Sbjct 12827 GCTAAACGCCATCGTAAAGTGCTCAGAGACAACATCCAGGGAATCACCAAGCCGGCTATT 12886 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||||||||| || || | |||||| || ||||||| || | | Sbjct 12887 CGTCGTCTGGCTCGTCGTGGTGGAGTGAAACGCATTTCTGGACTGATCTATGAGGAAACT 12946 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| || ||||| || ||| ||| Sbjct 12947 CGTGGAGTGCTGAAGGTTTTCCTCGAGAACGTCATTAGAGATGCCGTCACCTACTGTGAG 13006 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || || |||||||| |||| || || | ||||||||||| Sbjct 13007 CATGCGAAGAGAAAGACAGTGACGGCCATGGATGTCGTGTACGCGCTCAAACGTCAAGGA 13066 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| | ||| Sbjct 13067 CGTACACTGTACGGTTTCGGAGGATAA 13093 >seq283 Length=178855 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || | || ||||||||||| |||||||||||||| || Sbjct 10125 GCGAAACGCCATCGCAAAGTGCTCAGGGACAACATCCAAGGCATCACCAAGCCAGCCATT 10066 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || |||||| |||||||| || |||| || |||| | Sbjct 10065 CGTCGCCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGACTGATCTACGAGGAGACT 10006 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || |||| ||| || || ||| ||| Sbjct 10005 CGTGGGGTGCTGAAGGTGTTCCTAGAGAATGTGATCCGTGACGCCGTCACCTACTGCGAA 9946 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || ||| | ||||| ||||||| || | || || ||||| Sbjct 9945 CACGCCAAGAGAAAGACCGTTACCGCGATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 9886 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | | || || || || Sbjct 9885 CGTACGCTATACGGCTTCGG 9866 >seq4404 Length=4039 Score = 158 bits (174), Expect = 2e-34 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 2204 GACAACATCCAGGGCATCACCAAGCCGGCTATTCGTCGTCTGGCTCGTCGTGGTGGTGTG 2145 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||||||| || |||| ||||||| |||| || ||||| | || || || Sbjct 2144 AAGCGTATCTCTGGACTGATCTACGAAGAGACACGTGGAGTGCTGAAGGTGTTTCTGGAG 2085 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | || ||| || ||| ||| ||||| ||| | ||||| |||||| || Sbjct 2084 AATGTGATTCGCGACGCTGTCACCTACTGCGAACACGCCAAAAGAAAGACCGTCACCGCC 2025 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| |||| || || | || || ||||| || Sbjct 2024 ATGGACGTCGTGTACGCCCTCAAGCGCCAAGGACG 1990 >seq2470 Length=26931 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || | || |||||||| || ||||||||||| || || Sbjct 593 GCGAAGCGCCATCGCAAAGTGCTCAGGGACAACATCCAGGGCATCACCAAGCCGGCCATT 652 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||| ||||| || |||||| |||||||| || |||| || |||| Sbjct 653 CGTCGCTTGGCTCGTCGCGGTGGTGTGAAGCGTATCTCTGGACTGATCTACGAGGAGACG 712 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || || | ||| ||| || ||| ||| Sbjct 713 CGTGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGTGACGCTGTCACCTACTGCGAA 772 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| ||||||| |||| || || | || || ||||| Sbjct 773 CACGCTAAGAGAAAGACTGTCACCGCCATGGACGTCGTTTACGCCCTCAAGCGCCAAGGA 832 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 833 CGCACGCTGTACGGCTTCGG 852 >seq835 Length=99333 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || | || |||||||| || ||||||||||| || || Sbjct 7335 GCGAAACGCCATCGCAAAGTGCTCAGGGACAACATCCAGGGCATCACCAAGCCGGCCATT 7394 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||| ||||| || |||||| |||||||| || |||| || |||| Sbjct 7395 CGTCGCTTGGCTCGTCGCGGTGGTGTGAAGCGTATCTCTGGACTGATCTACGAGGAGACG 7454 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || || | ||||||| || ||| ||| Sbjct 7455 CGTGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGTGATGCTGTCACCTACTGCGAA 7514 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| ||||||| |||| || || | || || ||||| Sbjct 7515 CACGCTAAGAGAAAGACTGTCACCGCCATGGACGTCGTTTACGCCCTCAAGCGCCAAGGA 7574 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 7575 CGCACGCTGTACGGCTTCGG 7594 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || | || |||||||| || ||||||||||| || || Sbjct 92777 GCGAAACGCCATCGCAAAGTGCTCAGGGACAACATCCAGGGCATCACCAAGCCGGCCATT 92718 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||| ||||| || |||||| |||||||| || |||| || |||| Sbjct 92717 CGTCGCTTGGCTCGTCGCGGTGGTGTGAAGCGTATCTCTGGACTGATCTACGAGGAGACG 92658 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || || | ||| ||| || ||| ||| Sbjct 92657 CGTGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGTGACGCTGTCACCTACTGCGAA 92598 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| ||||||| |||| || || | ||||| ||||| Sbjct 92597 CACGCTAAGAGAAAGACTGTCACCGCCATGGACGTCGTTTACGCCCTCAAACGCCAAGGA 92538 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 92537 CGCACGCTGTACGGCTTCGG 92518 >seq1353 Length=64178 Score = 154 bits (170), Expect = 2e-33 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | || |||| |||||||| |||||||||| || ||||| Sbjct 6005 GCTAAACGTCATCGTAAAGTGCTCAGAGACAACATCCAGAGAATCACCAAACCGGCTATT 6064 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||||||| |||| || || | |||||| || ||||||| || | | Sbjct 6065 CGTCGTCTGGCTCGTCGTGGTAGAGTGAAACGCATTTCTGGACTGATCTATGAGGAAACT 6124 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| || ||||| || ||| ||| Sbjct 6125 CGTGGAGTGCTGAAGGTTTTCCTCGAGAACGTCATTAGAGATGCCGTCACCTACTGTGAG 6184 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||| || || |||||||| |||| || | | ||||||||||| Sbjct 6185 CATGCGAA--GAGAGACAGTGACGGCCATGGATGTCGTGTACGGGCTCAAACGTCAAGGA 6242 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || |||| ||| | ||| Sbjct 6243 CGTACGCTGTACGGTTCCGGAGGATAA 6269 >seq129 Length=239429 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || | || ||||||||||||||||||||||| || || Sbjct 102422 GCGAAGCGCCATCGTAAAGTGCTCAGGGACAACATCCAAGGAATCACCAAGCCGGCAATT 102481 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || ||||| |||| ||| || ||||||| |||| | Sbjct 102482 CGTCGTCTTGCCCGTCGTGGTGGTGTTAAGCGCATCTCAGGACTGATCTATGAGGAGACT 102541 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | || | ||||| ||| ||| ||| ||||| || ||| ||| Sbjct 102542 CGCGGCGTCCTCAAAGTTTTCCTTGAGAACGTCATCAGAGATGCCGTCACCTACTGTGAG 102601 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || || |||||||| |||| || || | ||||||||||| Sbjct 102602 CATGCGAAGAGAAAGACAGTGACGGCCATGGATGTCGTGTACGCTCTCAAACGTCAAGGA 102661 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 102662 CGTACGCTGTACGGTTTCGG 102681 >seq2183 Length=33403 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || | || |||||||| || |||||||| || ||||| Sbjct 6032 GCAAAACGCCATCGCAAAGTGCTCAGGGACAACATCCAGGGCATCACCAAACCGGCTATT 5973 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || || || |||||||| || |||| || || | Sbjct 5972 CGTCGCCTCGCTCGTCGTGGTGGTGTGAAACGCATCTCTGGACTGATCTACGAGGAAACG 5913 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || || ||| || || | ||| ||| || ||| ||| Sbjct 5912 CGTGGAGTGCTGAAGGTGTTTCTGGAGAATGTGATTCGTGACGCTGTCACCTACTGCGAA 5853 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| ||||||| |||| || || | || || ||||| Sbjct 5852 CACGCTAAGAGAAAGACTGTCACCGCCATGGACGTCGTGTACGCCCTCAAGCGCCAAGGA 5793 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 5792 CGCACGCTGTACGGCTTCGG 5773 >seq2146 Length=34327 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || |||| || ||||| || ||||||||||| || || Sbjct 32148 GCAAAACGCCATCGCAAAGTGCTCAGAGACAATATCCAGGGCATCACCAAGCCGGCCATT 32207 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| || |||||| |||||||| || | || ||||| | Sbjct 32208 CGTCGCTTGGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGACTGATTTACGAAGAAACG 32267 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| | ||||| ||| || || | ||| || | ||| ||| Sbjct 32268 CGTGGAGTGCTGAAAGTGTTCCTGGAGAATGTGATTCGTGACGCCGTTACCTACTGCGAA 32327 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| |||||||| |||| || || | || |||||||| Sbjct 32328 CACGCCAAGAGAAAGACCGTCACTGCCATGGATGTCGTGTACGCCCTCAAGCGTCAAGGA 32387 Query 16673 CG 16674 || Sbjct 32388 CG 32389 >seq194 Length=209268 Score = 93.3 bits (102), Expect = 7e-15 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 16434 CTAAGCGTCATCGCAGATCTCTTCGAG-ATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||| || ||||| | | || ||||| | |||||| | |||||||||||||| | || Sbjct 7900 CTAAACGACATCGTAAAG-TCCTCGAGGAGAACATCTAGGGAATCACCAAGCCGGTAATT 7958 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||| |||| |||| || | ||||||| || | ||||| || | Sbjct 7959 CGTCGTCTAGCTCGTCATGGTAGAGTGGAGAGCATCTCTGGTCTGATTTATGAGGAAACC 8018 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC--TTTCC-ACTATACC 16609 |||| | | |||||| |||||| ||| || | | ||||| || || | ||| Sbjct 8019 CGTGGCGCTCCGAAGATTTTCCTCGAGAAGGTCACCACGGATGCCGTTACCTAGTAT--- 8075 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||| || || ||||| || | | |||||| | || || || || |||||| || Sbjct 8076 GAGCATGCAAAGATAAAGACAGTGGCGGCTATGGATGTTGTGTAAGCTTTCAAACGTTAA 8135 >seq83 Length=266995 Score = 93.3 bits (102), Expect = 7e-15 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||||||||| || || || || || || || |||||||| | Sbjct 34815 GAGACAACATCCAGGGCATCACCAAGCCGGCAATTCGCCGCCTAGCGCGACGTGGTGGTG 34874 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 | |||||| |||||||| | |||| || |||| || || ||| ||||| | ||| Sbjct 34875 TGAAGCGTATCTCTGGACTAATCTACGAGGAGACTCATGGAGTTCTGAAGGTGTTC 34930 >seq87 Length=263845 Score = 82.4 bits (90), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 16465 CATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||||||| |||||| ||||||||| || |||||||| | | ||||||||||||| || || Sbjct 194655 CATCCAAAGAATCAGCAAGCCAGCGATTCGTCGTCTCGTTTGTCGTGGTGGAGTGAAACG 194596 Query 16525 TGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| || | ||| |||| | | ||||| || || || | ||||| ||| || Sbjct 194595 CACCTCAGGGCTAATCTGTGAA-AAACTCGTGGAGTACTGGAGGTGTTCCTTGAGAATGT 194537 Query 16585 TATCCATGATGC 16596 ||||| ||||| Sbjct 194536 AATCCAGGATGC 194525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069363064112