Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq109 131 2e-25 >seq109 Length=251363 Score = 131 bits (144), Expect = 2e-25 Identities = 293/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 |||||| | |||||| || || | || || || | | |||| || ||||| || || || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||| | ||||| ||| || || || || || | |||||||||| | || || || Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | | || || || ||| || | ||| |||| ||||| ||| | | ||| Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 ||||| || || | || || |||| || ||| | || || || ||||| ||||| | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || ||| || |||| | | |||||||| || | || | | ||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || ||||| | || || || || || || || || |||| | |||||||||||| Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACGT 60689 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 |||||||||| || |||||| |||||| || || || || ||||| | |||||| Sbjct 60690 TTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGTG 60749 Query 63737 CTGAGGTCTTTCAACGATCT 63756 || |||| |||| ||| || Sbjct 60750 TTGTGGTCGTTCAGCGACCT 60769 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 |||| |||||| | |||||| || || || | || ||||||||||| ||||| |||||| Sbjct 62292 GTTTTCTTGTGCAAATTTGAAACAGCGATCCGAGCTGCTAGAATGGCGTAATCGGGATGT 62351 Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091 | || || | || || |||| || |||||| |||||||||| || ||||| || Sbjct 62352 TTCGTTGTCATCGAAGCAGCGGTTTCAGCGGCCAGATTGTCCAATTCCACAGTTGTAACA 62411 Query 64092 CCATTATATATTCCTTGAATAACCTTCATAGC 64123 || || || | ||| || || ||||| || Sbjct 62412 CCTTTGTAGAGTCCAGCTATTACTTTCATGGC 62443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622897488813440