Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3834 122 6e-23 seq3052 91.5 1e-13 seq1483 86.0 4e-12 >seq3834 Length=8065 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 6525 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 6466 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 6465 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 6431 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 4360 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 4301 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 4300 GTTCGTATTTAGCCTTA 4284 >seq3052 Length=16588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 ||||| | ||||||||||||||||||||||||| ||||| | ||||||||||||| Sbjct 15063 CGTTCTCATGGCTGTGGTTTCGCTAGATAGTAGTTAGGGTCAGTGAGAATCTCGTTAATC 15004 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||||||| ||||| || |||| ||| || Sbjct 15003 CATTCATGCTCGTCAGTAGTTAGCTGATGA 14974 >seq1483 Length=57526 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||| ||||||| |||| Sbjct 1385 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAAAACTTGTTTGCTATCGAATTCGC 1326 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1325 GTTCGTATTTAGCCTTA 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334921139433104