Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq109 145 1e-29 >seq109 Length=251363 Score = 145 bits (160), Expect = 1e-29 Identities = 296/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 |||||| | |||||| || || | || || || | | |||| || ||||| || || || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 ||| || || || || || | ||| |||| ||||| ||| | | ||| Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 ||||| || || | || || |||| || ||| | || || |||||||| || || | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || ||| || |||| | | |||||||| || | || | | ||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || ||||| | || || || || ||||| || || |||| | |||||||||||| Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACGT 60689 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 |||||||||| || |||||| |||||| || || || || ||||| | |||||| Sbjct 60690 TTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGTG 60749 Query 63592 CTGAGGTCTTTCAACGATCT 63611 || |||| |||| ||| || Sbjct 60750 TTGTGGTCGTTCAGCGACCT 60769 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| ||||| | |||||| || || || | ||| ||||||||||| ||||| |||||| Sbjct 62292 GTTTTCTTGTGCAAATTTGAAACAGCGATCCGAGCTGCTAGAATGGCGTAATCGGGATGT 62351 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 | || || | || || |||| || |||||| |||||||||| || ||||| ||| Sbjct 62352 TTCGTTGTCATCGAAGCAGCGGTTTCAGCGGCCAGATTGTCCAATTCCACAGTTGTAACA 62411 Query 63947 CCATTATATATTCCTTGGATAACCTTCATAGC 63978 || || || | ||| || || ||||| || Sbjct 62412 CCTTTGTAGAGTCCAGCTATTACTTTCATGGC 62443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633581436166400