Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2031 100 2e-16 seq822 96.9 3e-15 seq109 93.3 4e-14 >seq2031 Length=37572 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22204 TATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTT 22263 ||||| || || | |||||||||||||| || ||| | || || ||||| |||||||| Sbjct 5232 TATACCATTTTAGATATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTT 5173 Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 || || || | | || ||| | || || | ||| || || |||||||| |||||| Sbjct 5172 GAGGTTGAGGCATCGGACACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGT 5113 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || || |||||||| |||||||| || || || || Sbjct 5112 ATCCCTCCCGATCAGCAACGTCTAATCTTCGCTGG 5078 >seq822 Length=101035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| |||| || || || | ||||| ||||||||| || | Sbjct 45835 ATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTCG 45894 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||| ||||||||||| || ||||| ||||| Sbjct 45895 GATACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCTGATCAG 45954 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || | ||||| || || || || Sbjct 45955 CAGAGGCTTATTTTCGCAGGTAA 45977 >seq109 Length=251363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| |||| | ||| |||| || || ||||| || || | ||| ||||| | || || Sbjct 60312 CAGATCAACTTACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCC 60371 Query 130161 CTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||||| ||| ||||| ||||||| || | | ||||||||| || || ||||| Sbjct 60372 TGGTCGTTTATTGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACAT 60431 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 || |||| || |||| ||||||||||||| |||| ||| ||| ||||||| Sbjct 60432 TGGAACCAACCCATTGGATGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAAT 60491 Query 130278 GTTATGAACGCTTAGACCTATGCCGCC 130304 ||||| ||| | | ||| || || || Sbjct 60492 TTTATGTACGTTCAAACCGATTCCTCC 60518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419695343062960