Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6209 105 1e-17 seq715 105 1e-17 seq6001 100 6e-16 seq5765 100 6e-16 seq5539 100 6e-16 seq6000 87.8 4e-12 seq996 86.0 1e-11 seq190 84.2 4e-11 >seq6209 Length=560 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 276 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 335 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 336 CCCCACATCGGGC 348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||| || | ||||||||||||| | |||| ||||||||| Sbjct 111 AGCCCGGTTAGCTCAGTCGGTAGTGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 170 Query 142563 CCCCACATCGGGC 142575 |||| | ||| || Sbjct 171 CCCCGCTTCGCGC 183 >seq715 Length=111570 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 216 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 157 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 156 CCCCACATCGGGC 144 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 1022 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 963 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 962 CCCCGCATCGGGC 950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||| Sbjct 754 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCCGGTTCGAG 695 Query 142563 CCCCACATCGGGC 142575 |||| ||||| || Sbjct 694 CCCCGCATCGCGC 682 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 589 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 530 Query 142563 CCCC 142566 |||| Sbjct 529 CCCC 526 >seq6001 Length=657 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 461 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 402 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 401 CCCCGCATCGGGC 389 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 626 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 567 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 566 CCCCGCATCGGGC 554 >seq5765 Length=759 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 503 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 444 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 443 CCCCGCATCGGGC 431 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 668 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 609 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 608 CCCCGCATCGGGC 596 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 338 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 279 Query 142563 CCCCACATCGGGCA 142576 || | ||||||||| Sbjct 278 CCACGCATCGGGCA 265 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 173 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 114 Query 142563 CCCCACATCGGGC 142575 |||| || ||||| Sbjct 113 CCCCGCACCGGGC 101 >seq5539 Length=936 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 752 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 693 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 692 CCCCGCATCGGGC 680 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||| |||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 92 AGCCCGGTTAGGTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 33 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 32 CCCCGCATCGGGC 20 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 917 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 858 Query 142563 CCCCACATCGGG 142574 | || |||||| Sbjct 857 CTCCGAATCGGG 846 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||| |||||||| | |||||| | ||||||||||||| | |||| ||||||||| Sbjct 587 AGCCCGGTGAGCTCAGTTGTTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 528 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 527 CCCCGCATCGGGC 515 >seq6000 Length=657 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||| || |||| | ||| ||||||||| | |||| ||||||||| Sbjct 85 AGCCCGGTTAGCTCAGTCCGTCGAGCACCAGAGTCTTAATCTGGCTGTCGCGGGTTCGAG 26 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 25 CCCCGCATCGGGC 13 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||| || |||| | ||| ||||||||| | |||| ||||||||| Sbjct 562 AGCCCGGTTAGCTCAGTCCGTCGAGCACCAGAGTCTTAATCTGGCTGTCGCGGGTTCGAG 503 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 502 CCCCGCATCGGGC 490 >seq996 Length=87173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 || |||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 87042 GCGCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 86983 Query 142564 CCCACATCGGGC 142575 | |||||||| Sbjct 86982 TACGCATCGGGC 86971 >seq190 Length=210120 Score = 84.2 bits (92), Expect = 4e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||| ||| | |||| ||||||||| Sbjct 102369 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAGTCTGGCTGTCGCGGGTTCGAG 102310 Query 142563 CCCCACATCGGGCAGA 142578 ||| || ||||| || Sbjct 102309 -CCCGCACCGGGCTGA 102295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027752728088944