Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq822 114 3e-20 seq108 102 2e-16 >seq822 Length=101035 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||| | ||| | || |||||||| ||||| | ||| ||| | ||||||||| || || Sbjct 45389 GTCGTATAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTT 45330 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||||||| ||||| ||||| ||||| |||| |||| || ||| || ||||| ||||| Sbjct 45329 ATCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGAT 45270 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || || || ||||| Sbjct 45269 CGTTTTGCCAGTAAGCGTTTTCACAAAGATTTGCAT 45234 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| ||||| | ||| ||| |||||| |||||||||||||| || ||| Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | ||| | ||| |||||||| || || ||||| || || Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || |||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCATT 45534 >seq108 Length=252160 Score = 102 bits (112), Expect = 2e-16 Identities = 109/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| || || || ||||| |||||||| ||||| ||||| || Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGG---TCTGGAGGAATTCCTTCCTTATCTTGGATCTTG 244390 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| |||||||| || Sbjct 244389 GCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTA 244330 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| Sbjct 244329 AGCGTCTTCACGAAGATCTGCAT 244307 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || ||||| ||||| || || || ||||| |||||||| ||||| ||||| || Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGG---TCTGGAGGAATTCCTTCCTTATCTTGGATCTTG 244699 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| |||||||| || Sbjct 244698 GCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTA 244639 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| Sbjct 244638 AGCGTCTTCACGAAGATCTGCAT 244616 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| || || || ||||| ||||||||||| || ||||| || Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGG---TCTGGAGGAATTCCTTCTTTGTCTTGGATCTTG 244083 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| || || ||||| || || Sbjct 244082 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTA 244023 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || ||||| Sbjct 244022 AGAGTTTTCACGAAAATTTGCAT 244000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179557910168352