Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq108 111 1e-19 seq822 87.8 2e-12 >seq108 Length=252160 Score = 111 bits (122), Expect = 1e-19 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| |||||||||||| || ||||| |||||||| ||||| || || | Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || | || | |||| ||||| || | |||||| ||||| |||| || || || || || Sbjct 244079 TTCA-CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAG 244021 Query 45320 AGTTTTTACAAAAATTTGCATCGCG 45344 |||||| || ||||||||||| ||| Sbjct 244020 AGTTTTCACGAAAATTTGCATAGCG 243996 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| |||||||||||| || ||||| ||||| |||||||| || || | Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | |||||| || | |||||| |||||||| | ||||| || || ||| Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCAGTGAGA 244944 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || ||||||||||| ||||| Sbjct 244943 GTCTTTACAAAAATCTGCAT 244924 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| |||||||||||| || ||||| ||||| |||||||| || || | Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || | || | |||| ||||| |||| |||||| ||||| || | || || || || || Sbjct 244386 TTCA-CGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAG 244328 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| Sbjct 244327 CGTCTTCACGAAGATCTGCAT 244307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| |||||||||||| || ||||| ||||| |||||||| || || | Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244696 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || | || | |||| ||||| |||| |||||| ||||| || | || || || || || Sbjct 244695 TTCA-CGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAG 244637 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| Sbjct 244636 CGTCTTCACGAAGATCTGCAT 244616 >seq822 Length=101035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | |||| | ||||| ||||| || || ||||||||||| ||||| || Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | || || || | || ||||||||||||| || || || ||| Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| |||||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCAT 45535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451967130144640