Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1876 143 1e-28 seq108 95.1 5e-14 seq312 84.2 9e-11 seq9 84.2 9e-11 >seq1876 Length=42991 Score = 143 bits (158), Expect = 1e-28 Identities = 199/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || |||||||| |||||||| || ||||| | || || ||||| ||||| ||| Sbjct 17475 GATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGAT 17416 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 ||||| ||| || ||| | ||||| |||||||| || || || || ||||| |||||| Sbjct 17415 GCAGGGGCTATCGCGGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCT 17356 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || ||||| || | || || | |||| || | |||| || | |||||||| Sbjct 17355 ATCGCCTATGGTCTCGACAAG---AAGGGTACAGGGGAGAGAAATGTTCTCATATTTGAT 17299 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || ||||| ||| ||| | || | ||||||||||| | || ||||| Sbjct 17298 CTTGGAGGGGGAACCTTTGACGTTTCCATCCTGACTATTGAAGATGGCATTTTCGAAGTG 17239 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| | || ||| || || ||||| ||||| || || Sbjct 17238 AAGTCTACTGCTGGAGACACGCATCTTGGAGGGGAGGA 17201 Score = 95.1 bits (104), Expect = 5e-14 Identities = 245/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957 || ||||| ||||| ||||| || || || ||||||||| | || | | ||||| | Sbjct 16899 GACATTGTACTTGTTGGAGGCTCGACGCGTATTCCTAAAGTGCAGAAACTTCTGTCTGAT 16840 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 || ||||| |||| ||| | | || || ||||||||||| || |||||| Sbjct 16839 CTGTTCTCTGGAAAGGAACTGAACAAGTCCATCAACCCAGATGAAGCTGTCGCTTATGGT 16780 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074 ||||| || || || || || || |||| ||| | |||| | |||| || Sbjct 16779 GCTGCTGTGCAGGCCGCCATCCTTTCAGGC---GATAAATCTGAAGCGGTCCAAGATCTT 16723 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || | | ||||| | || || || ||||| |||| || ||||| || | ||||| Sbjct 16722 CTTCTTCTTGATGTCGCTCCACTCTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACC 16663 Query 452135 AATTTAATTAAACGAGGAACTTCT--ATTCCTTGTAAAAAGAGTCAAACATTTAGTACAG 452192 ||| ||||| ||||||| | || ||| || | || || || |||| ||| Sbjct 16662 GCTTTGATTAA--GAGGAACACCACAATCCCTACAAAGACAAGCCAGACGTTTACGACAT 16605 Query 452193 CAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACAC 452252 || |||||||| || ||| || || || |||||||||||||| || ||||| Sbjct 16604 ACTCCGACAACCAACCCGGGGTATTGATCCAGGTCTTTGAAGGAGAACGAGCGATGACGA 16545 Query 452253 GAGATAATAA 452262 ||| ||||| Sbjct 16544 AAGACAATAA 16535 >seq108 Length=252160 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || ||||| |||||||| ||||| || || || | ||| Sbjct 244924 ATGCAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCT 244983 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || ||||||||||||||||||||||| || || Sbjct 244984 GACACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 245043 Query 391170 CAACGTTTAATTTTC 391184 ||||| | |||||| Sbjct 245044 CAACGACTGATTTTC 245058 >seq312 Length=170851 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 |||||||||||||| ||||||| || |||||||| || | || || |||| || Sbjct 15490 CCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCGGAGTCATATCTT 15431 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || | |||| || | ||||| || || || ||||| ||||| || || Sbjct 15430 GGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAACGATGCGCAGCGT 15371 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || || ||||| || |||||||| |||| || | ||||| || || || Sbjct 15370 CAAGCCACAAAGGATGCTGGGACGATTGCTGGCCTAAACGTCGTACGAATAATCAACGAG 15311 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || ||||| | ||||| || || Sbjct 15310 CCCACTGCTGCTGCCATCGCATACGGTCT 15282 >seq9 Length=429818 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||||||||| ||||||||||| ||||| |||||| | |||||||| || Sbjct 57660 GCTACAAAGGATGCAGGACAAATTGCTGGTTTGAATGTCCTTCGAGTGATTAATGAGCCC 57601 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || || || ||||| || || || || | ||| || |||| Sbjct 57600 ACTGCTGCAGCTCTTGCTTACGGTCTGGATAAAACAGAAGA 57560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975556796113472