Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1876 241 1e-57 seq312 95.1 9e-14 >seq1876 Length=42991 Score = 241 bits (266), Expect = 1e-57 Identities = 671/1019 (66%), Gaps = 24/1019 (2%) Strand=Plus/Plus Query 517301 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT---TAAATGTT 517357 || ||||| || || || || | |||| |||||||| |||| || | | || Sbjct 16469 ACCTCAATCTGTGGCACTCCACGTGGAGCTGGTGGGAT----TCCAGATAGCTCGAACTT 16524 Query 517358 CCCA-GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAAC 517416 |||| || ||||| ||||| || | |||||| || || || | ||||| || Sbjct 16525 CCCAAGAAGGTTATTGTCTTTCGTCATCGCTCGTTCTCCTTCAAAGACCTGGATCAATAC 16584 Query 517417 TACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTG 517475 | | ||| || || || || || ||||| ||||| || | || ||| ||||| | Sbjct 16585 CCCGGGTTGGTTGTCGGAGTATGTCGTAAACG-TCTGGCTTGTCTTTGTAGGGATTGTGG 16643 Query 517476 TGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAG 517535 |||| || | ||| | | |||||||| ||| || || || || | |||||| || || | Sbjct 16644 TGTTCCTCTTAATCAAAGCGGTCATAACACCTCCAGCAGTCTCAATACCAAGCGAGAGTG 16703 Query 517536 GAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAG 517595 ||| |||||||| || | || || ||| | |||| | | || ||| || | Sbjct 16704 GAGCGACATCAAGAAGAAGAAGATCTTGGACCGCTTCAGATTTATCGCCTGAAAGGATGG 16763 Query 517596 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 517655 | || || | |||||||||||| || ||||||||||| || || | | | || |||| Sbjct 16764 CGGCCTGCACAGCAGCACCATAAGCGACAGCTTCATCTGGGTTGATGGACTTGTTCAGTT 16823 Query 517656 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCT 517714 || ||| ||| | || || ||||||| ||| || ||||||||||| | || ||| Sbjct 16824 CCTTTCCAGAGAACAGATCAGACAGAAGTT-TCTGCACTTTAGGAATACGCGTCGAGCCT 16882 Query 517715 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 517774 ||||| | |||||| || | |||||| || |||| ||| | ||| | | || Sbjct 16883 CCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGGCATCTCTGAGAGACTTC 16942 Query 517775 TCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 517834 ||||| || || | || | || | || | |||||| || || || || | Sbjct 16943 TCAACTGGGTCCATGGTCGAACGGAAGAGATCGGCACAAAGCTCCTCAAACCGGGCACGG 17002 Query 517835 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 517894 |||| | | ||||||| |||||||| | || |||| ||||| | || ||| Sbjct 17003 GTAATGTTTGTGTAGAAATCAATGCCTTCGAAGAGTGAGTCAATCTCAATGGAAGCCTGA 17062 Query 517895 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT 517954 | || || || || | ||| || || ||||| || || || | || | || | || Sbjct 17063 GATGACGATGAAAGAGTACGCTTTGCGCGTTCGCAAGCAGTACGAAGACGTCTGAGCGCA 17122 Query 517955 TTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG 518012 || |||| | | | ||| | || | ||||| |||||| ||| | ||| | Sbjct 17123 C--GCGGATTAGTGTTTAGGTCTTTCTTGTGTTTTCGCTTGAACTCTGCCACAAAGTGGT 17180 Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 | || | || || || || || || ||||| | | || | ||| | |||| | | Sbjct 17181 TGACCATGCGGTTGTCGAAGTCCTCCCCTCCAAGATGCGTGTCTCCAGCAGTAGACTTCA 17240 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 ||| ||||| |||||||||| || || | | || ||| |||||| || || | || Sbjct 17241 CTTCGAAAATGCCATCTTCAATAGTCAGGATGGAAACGTCAAAGGTTCCCCCTCCAAGAT 17300 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGG----TTTTTATCAAGACCATACGCAAAA 518188 |||| || || ||||| ||| | | || || || || |||||||| || | | Sbjct 17301 CAAATATGAGAACATT----TCTCTCCCCTGTACCCTTCTTGTCGAGACCATAGGCGATA 17356 Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 |||||||| ||||| || || || |||| | ||||||||||| || || |||||| Sbjct 17357 GCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACATTAAGACCCGCGATAGCCCCTGCA 17416 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || ||||| ||||| | || || || ||||| || || || |||||||| |||||||| Sbjct 17417 TCCTTAGTAGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGTACAGTAATGACGGCATC 17475 >seq312 Length=170851 Score = 95.1 bits (104), Expect = 9e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||||||||| || || | ||||||||||| || || || || |||| | || Sbjct 15273 TTCTTATCAAGACCGTATGCGATGGCAGCAGCAGTGGGCTCGTTGATTATTCGTACGACG 15332 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || ||||| || |||||||| | || | |||||| || || Sbjct 15333 TTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGCTGCGCATCGTTGAAGTAC 15392 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| | ||| |||| | || || || |||| ||| | || | | Sbjct 15393 GCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATATGACTCCGCAATCTCC 15452 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 |||||||| | | | ||| | ||||||| ||| |||| Sbjct 15453 TTCATTTTTCCCAGCACCATAGCCGAAATTTCTTCAGGGG 15492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780505604891104