Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1876 235 7e-57 seq1039 179 5e-40 seq312 143 3e-29 seq109 118 1e-21 >seq1876 Length=42991 Score = 235 bits (260), Expect = 7e-57 Identities = 572/858 (67%), Gaps = 14/858 (2%) Strand=Plus/Plus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | || || || || || ||| ||| | | |||||||| ||| || ||| | Sbjct 16626 TCTTTGTAGGGATTGTGGTGTTCCTCTTAATCAAAGCGGTCATAACACCTCCAGCAGTCT 16685 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 | | ||||| || || || | || || | || | || ||||| || | ||| Sbjct 16686 CAATACCAAGCGAGAGTGGAGCGACATCAAGAAGAAGAAGATCTTGGACCGCTTCAGATT 16745 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 || || | | ||||||||| || || | || || || ||||| || ||||| |||| Sbjct 16746 TATCGCCTGAAAGGATGGCGGCCTGCACAGCAGCACCATAAGCGACAGCTTCATCTGGGT 16805 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | || | || |||||||| || || || ||| || | | || || | ||| | Sbjct 16806 TGATGGACTTGTTCAGTTCCTTTCCAGAGAACAGATCAGACAGAAGTTTCTGCACTTTAG 16865 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 | || || ||||| || || || | || || || ||||| | || || || || | Sbjct 16866 GAATACGCGTCGAGCCTCCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGG 16925 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 |||| || | || || || || ||||| |||||| | || ||| || | Sbjct 16926 CATCTCTGAGAGACTTCTCAACTGGGTCCATGGTCGAACGGAAGAGATCGGCACAAAGCT 16985 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 ||||||| || |||||||||||| ||| |||||||||| ||| ||| | | || |||| Sbjct 16986 CCTCAAACCGGGCACGGGTAATGTTTGTGTAGAAATCAATGCCTTCGAAGAGTGAGTCAA 17045 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 | ||||||| | || | | ||| || | || ||||||||||| || || || || | Sbjct 17046 TCTCAATGGAAGCCTGAGATGACGATGAAAGAGTACGCTTTGCGCGTTCGCAAGCAGTAC 17105 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | ||| | || |||||||| ||| | | |||||||| ||||| || || |||| Sbjct 17106 GAAGACGTCTGAGCGCACGCGGATTAGTGTTTAGGTCTTTCTTGTGTTTTCGCTTGAACT 17165 Query 7428 CTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || | |||| || || | | | | ||||| || || || || | || || | Sbjct 17166 CTGCCACAAAGTGGTTGACCATGCGGTT---GTCGAAGTCCTCCCCTCCAAGATGCGTGT 17222 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || || || | || ||||| || || || ||||||| | | | ||||| |||| Sbjct 17223 CTCCAGCAGTAGACTTCACTTCGAAAATGCCATCTTCAATAGTCAGGATGGAAACGTCAA 17282 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT---GTTCTTAT 7601 | || || || || || ||||| ||||| || || | || || || | ||||| | Sbjct 17283 AGGTTCCCCCTCCAAGATCAAATATGAGAACATT--TCTC-TCCCCTGTACCCTTCTTGT 17339 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGG 7660 ||||||| || |||||||| || || ||||| || || || || |||| |||| || || Sbjct 17340 CGAGACCATAGGCGATAGCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACA-TTAAGA 17398 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || || |||| | ||||| || || ||||| || || || || |||||||| || || Sbjct 17399 CCCGCGATAGCCCCTGCATCCTTAGTAGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGT 17458 Query 7721 ACCGTTACGACCGCGTCC 7738 || || | ||| || ||| Sbjct 17459 ACAGTAATGACGGCATCC 17476 >seq1039 Length=83987 Score = 179 bits (198), Expect = 5e-40 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 || ||| || || || || ||||| ||||| |||||||| |||||||| || || || | Sbjct 42870 CGCCTTCTTTTTTGTCCAGCCCGTAAGCGATGGCCGCCGCGGTTGGTTCGTTGATGATTC 42811 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 ||| | ||||| |||||||| ||| | |||||||| || |||||||| || | ||| | Sbjct 42810 GAACAACATTCAGTCCAGCAATCGTTCCGGCATCTTTTGTGGCTTGTCGCTGAGCATCAT 42751 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 |||||||||| || || || || || || ||| | |||| || || ||||| || || | Sbjct 42750 TAAAGTAGGCAGGCACAGTGACTACTGCATCCTTCACTTCTTTGCCAAGATATGACTCGG 42691 Query 7767 CGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 | || || ||||| ||||| || ||||| | ||||||||| || | || |||||||| | Sbjct 42690 CAATCTCCTTCATCTTGGTCAGCACCATAGCTGAAATCTCCTCCGGGGCGAACTGTTTTG 42631 Query 7827 TTTC 7830 |||| Sbjct 42630 TTTC 42627 >seq312 Length=170851 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 |||||||| |||||||| ||||| || || || || || || || || || || | ||| Sbjct 15273 TTCTTATCAAGACCGTATGCGATGGCAGCAGCAGTGGGCTCGTTGATTATTCGTACGAC- 15331 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| ||||||||||| || | ||||| || || ||||| || |||| |||||| ||||| Sbjct 15332 GTTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGCTGCGCATCGTTGAAGTA 15391 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || || || || | | | || | ||| || ||||| || ||||| || || Sbjct 15392 CGCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATATGACTCCGCAATCTC 15451 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 |||||||| || ||||| | ||||| ||||||| | || ||||||| Sbjct 15452 CTTCATTTTTCCCAGCACCATAGCCGAAATTTCTTCAGGGGTGAATTGTTTCG 15504 >seq109 Length=251363 Score = 118 bits (130), Expect = 1e-21 Identities = 280/419 (67%), Gaps = 7/419 (2%) Strand=Plus/Plus Query 105658 TCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACG---ACGC 105714 |||| |||||| || |||||||| || | ||||| ||||| || ||| || | Sbjct 60325 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTG 60384 Query 105715 CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCA 105774 || |||||| || |||| || || ||| || || ||||||||||||| | ||| Sbjct 60385 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 60444 Query 105775 TCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGT 105834 | |||||| || ||||| || | ||| || | | || || | | || |||| Sbjct 60445 TTGGATGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTC 60504 Query 105835 AACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATA 105894 || || || || ||||| | ||| || | ||||| | || | |||||| |||||| Sbjct 60505 AAACCGATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATA 60564 Query 105895 CCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGT 105954 ||| | || ||| || | ||| | ||| ||||| ||||| | || || | || Sbjct 60565 CCGGCAATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGT 60624 Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAA--CGCTT 106012 || ||||| || |||| ||||||| ||||||| |||| | | | ||| | | | || Sbjct 60625 GTTCCAGCGTTAAACATTGTTGGTGATGCATGAGTGAA-ATATCGTTCACTCATTAGATT 60683 Query 106013 CGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 ||| ||||| | | ||| ||||| | ||||||||||| | || || |||||| Sbjct 60684 -GTACGTTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATA 60741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635082116402560