Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq108 122 2e-22 seq822 109 1e-18 seq2031 84.2 5e-11 >seq108 Length=252160 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| |||||||||||| |||||||| |||||||||||||| |||||||||||||| || | Sbjct 244144 GCTCACCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCT 244085 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || |||||||| || ||||| || || || || || |||| ||||| || | Sbjct 244084 TGGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAG 244025 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | |||||| ||||| | |||||| Sbjct 244024 TAAGAGTTTTCACGAAAATTTGCAT 244000 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| |||||||||||| |||||||| |||||||||||||| ||||| || ||||| || | Sbjct 244451 GCTCACCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCT 244392 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || |||||||| || ||||| ||| || || || ||||| | ||||| || | Sbjct 244391 TGGCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCG 244332 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | || || ||||| | ||||| Sbjct 244331 TAAGCGTCTTCACGAAGATCTGCAT 244307 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||| |||| ||||| || |||||||| |||||||||||||| ||||| || ||||| || Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || || || |||||||||||||| || || || || || || | || ||||| Sbjct 245009 TTAGCTTTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCA 244950 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| ||||| || | ||||| Sbjct 244949 GTGAGAGTCTTTACAAAAATCTGCAT 244924 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| ||||| || |||||||| |||||||||||||| ||||| || ||||| || | Sbjct 244760 GCTCACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCT 244701 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || |||||||| || ||||| ||| || || || ||||| | ||||| || | Sbjct 244700 TGGCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCG 244641 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | || || ||||| | ||||| Sbjct 244640 TAAGCGTCTTCACGAAGATCTGCAT 244616 >seq822 Length=101035 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||||||||| ||||| | || || || || || || || || ||||| ||||| || Sbjct 45978 CTTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTT 45919 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||| || ||||| ||||||||| || |||| |||||||| || Sbjct 45918 CGCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 45858 TAGAGTTTTCACAAAGATTTGCATT 45834 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||||||||| || || | || || || || || || |||||||| || ||||| || Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| |||||||| || ||||| ||||||||| || |||| |||||||| || Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCATT 45534 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | || || || ||||| || || || ||||| || || ||||| Sbjct 47216 CTTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTT 47157 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || |||||||||||||||||| || ||||| | || | |||||||| || Sbjct 47156 TGTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGT 47097 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | ||||| Sbjct 47096 AAGCGTTTTTACAAATATCTGCAT 47073 >seq2031 Length=37572 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| |||||||| || ||||| || || ||||| || || ||||||||||| || || Sbjct 5077 ACCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGC 5136 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || || || ||||||||||| || || ||||| || | || ||||| || | Sbjct 5137 TTTAACATTTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAG 5196 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||| || || || | |||||| Sbjct 5197 AGTCTTCACAAAAATTTGCAT 5217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109390849952528