Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq108 86.0 4e-12 seq2031 82.4 5e-11 >seq108 Length=252160 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || || ||||||||||||||| | || | || ||||| || ||||| | Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || ||| |||||| ||| ||||| || |||| ||| ||||| || ||||| || Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327 Query 34962 GTCTTCACAAAGATCTGCAT 34981 |||||||| ||||||||||| Sbjct 244326 GTCTTCACGAAGATCTGCAT 244307 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || || ||||||||||||||| | || | || ||||| || ||||| | Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244696 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || ||| |||||| ||| ||||| || |||| ||| ||||| || ||||| || Sbjct 244695 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244636 Query 34962 GTCTTCACAAAGATCTGCAT 34981 |||||||| ||||||||||| Sbjct 244635 GTCTTCACGAAGATCTGCAT 244616 >seq2031 Length=37572 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || ||||| |||||||| || | || | ||||| ||||| |||||| | Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137 Query 34902 TTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || || || | ||||| | ||| |||||||| || | || ||||||||||| || Sbjct 5138 TTAAC--AT--TTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGT 5193 Query 34958 GAGAGTCTTCACAAAGATCTGCATAT 34983 ||||||||||||||| || ||||||| Sbjct 5194 GAGAGTCTTCACAAAAATTTGCATAT 5219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324608341882752