Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq109 159 4e-34 >seq109 Length=251363 Score = 159 bits (176), Expect = 4e-34 Identities = 299/435 (69%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 ||||| ||||||||||| || | ||| ||||| | | |||||||||||||| || ||| Sbjct 60331 ATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCCT 60390 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | |||| ||||||||||| || || | ||||||||| || | ||||| ||| Sbjct 60391 TGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGAT 60450 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA-CTAATTGAAATACC 48484 | || || || || ||| || ||| | || | || ||| || | || ||| Sbjct 60451 GTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAA-ACC 60509 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 || || || || | || |||||||||||||| | || | ||||||||||| || | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || ||| || |||| | || |||||||| || | ||||| ||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCAT--TTCTCTGATAACAATTTATAT 48662 | ||||| | |||||| ||||||||| | || || ||| || || | | || || Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGA--TTGTAC 60687 Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 ||||||||| | | ||| |||||| ||| ||||| | | || ||||| | ||| Sbjct 60688 GTTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATG 60747 Query 48723 TATTGAGGTCTTTCA 48737 | ||| |||| |||| Sbjct 60748 TGTTGTGGTCGTTCA 60762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562063943717760