Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1039 122 7e-22 seq1876 111 1e-18 seq312 105 5e-17 seq108 102 7e-16 seq822 95.1 1e-13 >seq1039 Length=83987 Score = 122 bits (134), Expect = 7e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| || | || || | |||||| ||||||| | | || ||||| | | ||| Sbjct 42633 AAACAGTTCGCCCCGGAGGAGATTTCAGCTATGGTGCTGACCAAGATGAAGGAGATTGCC 42692 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | | |||| ||||||| | |||||||||| | ||||| || || || ||||| Sbjct 42693 GAGT-CATATCTTGGCAAAGAAGTGAAGGATGCAGTAGTCACTGTGCCTGCCTACTTTAA 42751 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| | || || ||||| || |||||||| ||| ||||||||||| |||||| |||| Sbjct 42752 TGATGCTCAGCGACAAGCCACAAAAGATGCCGGAACGATTGCTGGACTGAATGTTGTTCG 42811 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || ||||| ||||| || || || || | || || || || || ||| Sbjct 42812 AATCATCAACGAACCAACCGCGGCGGCCATCGCTTACGGGCTGGACAAA 42860 >seq1876 Length=42991 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || |||||||| || || ||||||||||| || || ||||||||||| || Sbjct 17476 GGATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGA 17417 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||| || || |||||||| ||||| || || || || || || |||||||| Sbjct 17416 TGCAGGGGCTATCGCGGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGC 17357 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 17356 TATCGCCTATGGTCTCGACAA 17336 >seq312 Length=170851 Score = 105 bits (116), Expect = 5e-17 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 |||||||| | || ||| ||||||| ||||||| | |||||||| | | || Sbjct 15502 AAACAATTCACCCCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 15443 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | | |||| | || || | | |||| || | ||||| ||||| || || || Sbjct 15442 GAGT-CATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAA 15384 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTC 550487 || | || |||||||| || || |||||||| ||| |||||||| || || || | | Sbjct 15383 CGATGCGCAGCGTCAAGCCACAAAGGATGCTGGGACG-ATTGCTGGCCTAAACGTCGTAC 15325 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || ||||| || || ||||||||||| | ||||| || |||||||| Sbjct 15324 GAATAATCAACGAGCCCACTGCTGCTGCCATCGCATACGGTCTTGATAA 15276 >seq108 Length=252160 Score = 102 bits (112), Expect = 7e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || || || |||| |||||| || ||||||||||||||||| ||||| || || | Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || || |||| || | | ||||| |||| || ||||||||||| Sbjct 244079 TTCACGTTCTCTATCGTGTCAGA-TGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAG 244021 Query 563454 AGTTTTAACGAAAATTTGCATAG 563476 |||||| |||||||||||||||| Sbjct 244020 AGTTTTCACGAAAATTTGCATAG 243998 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || ||||| |||| |||||| || |||||||||||||| |||||||| || || | Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| || |||| | || |||||||| | |||||| ||||| || Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGAC-CTCGAGAGTGATAGTTTTTCCAGTGAG 244945 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||| ||||| Sbjct 244944 AGTCTTTACAAAAATCTGCAT 244924 >seq822 Length=101035 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || ||||| || || |||||||| || || || ||||||||||| ||||| || Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 || || |||||||||||| | | | | || ||||||||||| || || ||||| Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45559 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| || || |||||||| Sbjct 45558 TAGAGTTTTCACAAAGATTTGCAT 45535 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || |||||||| || ||||||||||| || || || || || || ||||| || Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 || || |||||||||||| | | | | || ||||||||||| || || ||||| Sbjct 45917 GCCTTGACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| || || |||||||| Sbjct 45858 TAGAGTTTTCACAAAGATTTGCAT 45835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028958385288160