Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 122 7e-22
seq1876 111 1e-18
seq312 105 5e-17
seq108 102 7e-16
seq822 95.1 1e-13
>seq1039
Length=83987
Score = 122 bits (134), Expect = 7e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
||||| || | || || | |||||| ||||||| | | || ||||| | | |||
Sbjct 42633 AAACAGTTCGCCCCGGAGGAGATTTCAGCTATGGTGCTGACCAAGATGAAGGAGATTGCC 42692
Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
||| | | | |||| ||||||| | |||||||||| | ||||| || || || |||||
Sbjct 42693 GAGT-CATATCTTGGCAAAGAAGTGAAGGATGCAGTAGTCACTGTGCCTGCCTACTTTAA 42751
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| | || || ||||| || |||||||| ||| ||||||||||| |||||| ||||
Sbjct 42752 TGATGCTCAGCGACAAGCCACAAAAGATGCCGGAACGATTGCTGGACTGAATGTTGTTCG 42811
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
|| ||||| ||||| || || || || | || || || || || |||
Sbjct 42812 AATCATCAACGAACCAACCGCGGCGGCCATCGCTTACGGGCTGGACAAA 42860
>seq1876
Length=42991
Score = 111 bits (122), Expect = 1e-18
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| || || |||||||| || || ||||||||||| || || ||||||||||| ||
Sbjct 17476 GGATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGA 17417
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| || ||| || || |||||||| ||||| || || || || || || ||||||||
Sbjct 17416 TGCAGGGGCTATCGCGGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGC 17357
Query 550516 ACTTGCATATGGACTTGATAA 550536
| || ||||| || || ||
Sbjct 17356 TATCGCCTATGGTCTCGACAA 17336
>seq312
Length=170851
Score = 105 bits (116), Expect = 5e-17
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|||||||| | || ||| ||||||| ||||||| | |||||||| | | ||
Sbjct 15502 AAACAATTCACCCCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 15443
Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
||| | | | |||| | || || | | |||| || | ||||| ||||| || || ||
Sbjct 15442 GAGT-CATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAA 15384
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTC 550487
|| | || |||||||| || || |||||||| ||| |||||||| || || || | |
Sbjct 15383 CGATGCGCAGCGTCAAGCCACAAAGGATGCTGGGACG-ATTGCTGGCCTAAACGTCGTAC 15325
Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
| || ||||| || || ||||||||||| | ||||| || ||||||||
Sbjct 15324 GAATAATCAACGAGCCCACTGCTGCTGCCATCGCATACGGTCTTGATAA 15276
>seq108
Length=252160
Score = 102 bits (112), Expect = 7e-16
Identities = 110/143 (77%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| || || || |||| |||||| || ||||||||||||||||| ||||| || || |
Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||| || || |||| || | | ||||| |||| || |||||||||||
Sbjct 244079 TTCACGTTCTCTATCGTGTCAGA-TGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAG 244021
Query 563454 AGTTTTAACGAAAATTTGCATAG 563476
|||||| ||||||||||||||||
Sbjct 244020 AGTTTTCACGAAAATTTGCATAG 243998
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| || ||||| |||| |||||| || |||||||||||||| |||||||| || || |
Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || |||||| || |||| | || |||||||| | |||||| ||||| ||
Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGAC-CTCGAGAGTGATAGTTTTTCCAGTGAG 244945
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| || || ||||| |||||
Sbjct 244944 AGTCTTTACAAAAATCTGCAT 244924
>seq822
Length=101035
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || || ||||| || || |||||||| || || || ||||||||||| ||||| ||
Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450
|| || |||||||||||| | | | | || ||||||||||| || || |||||
Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45559
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||||| || || ||||||||
Sbjct 45558 TAGAGTTTTCACAAAGATTTGCAT 45535
Score = 91.5 bits (100), Expect = 1e-12
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || || |||||||| || ||||||||||| || || || || || || ||||| ||
Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450
|| || |||||||||||| | | | | || ||||||||||| || || |||||
Sbjct 45917 GCCTTGACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||||| || || ||||||||
Sbjct 45858 TAGAGTTTTCACAAAGATTTGCAT 45835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028958385288160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |