Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1876 154 1e-31 seq1039 141 6e-28 seq312 113 3e-19 seq108 91.5 1e-12 seq2031 89.7 3e-12 >seq1876 Length=42991 Score = 154 bits (170), Expect = 1e-31 Identities = 441/662 (67%), Gaps = 26/662 (4%) Strand=Plus/Minus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 ||||||||| | |||||||| ||||| || ||||| ||||||| || | |||| || Sbjct 17115 AGACGTCTTCGTACTGCTTGCGAACGCGCAAAGCGTACTCTTTCATCGTCATCTCAGGCT 17056 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | |||| |||| || || || ||||| ||||||| | || ||||| | || Sbjct 17055 TCCATTGAGATTGACTCACTCTTCGAAGGCATTGATTTCTACACAAACATTACCCGTGCC 16996 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT- 475662 ||||| || ||||| | |||||||| | || || || || ||||| |||| Sbjct 16995 CGGTTTGAGGAGCTTTGTGCCGATCTCTTCCGTTCGACCATGGACCCAGTTGAG-AAGTC 16937 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 |||||||||| | ||| | ||||| || || | || ||||| ||||| ||||| || Sbjct 16936 TCTCAGAGATGCCAAAATGGACAAGAGTCAGGTGAACGACATTGTACTTGTTGGAGGCTC 16877 Query 475723 AACAAGAATTCCAAAAATAAGAGAAA-TGCTTTCATCATATTTTAA-TGGTAAAAAGTTA 475780 || | ||||| ||| | ||||| | || || | || | || ||| |||| | Sbjct 16876 GACGCGTATTCCTAAAGTGC-AGAAACTTCTGTC-TGATCTGTTCTCTGG---AAAGG-A 16823 Query 475781 AATGAA--AGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836 | |||| ||| | || || ||||||||||| || ||||| |||||||| || || || Sbjct 16822 ACTGAACAAGTCCATCAACCCAGATGAAGCTGTCGCTTATGGTGCTGCTGTGCAGGCCGC 16763 Query 475837 TATTTTATCAGG---TCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAAC 475893 || | ||||| | |||| || | | | | || || | ||| |||| || | Sbjct 16762 CATCCTTTCAGGCGATAAATCTGAAGCG---GTCCAAGATCTTCTTCTTCTTGATGTCGC 16706 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 |||||| || | ||| |||| || | |||||| ||||||| | | ||| | || || Sbjct 16705 TCCACTCTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACCGCTTTGATTAAGAGGAA 16646 Query 475954 TACTCCTATCCCATGCAAA---AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAAC 476010 || | ||||| | |||| || || | | ||| | || || || || || ||| | Sbjct 16645 CACCACAATCCC-TACAAAGACAAGCCAGACG--TTTACGACATACTCCGACAACCAACC 16589 Query 476011 AACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT 476070 ||| ||||| |||||||||| ||| || | || ||||| |||||| || Sbjct 16588 CGGGGTATTGATCCAGGTCTTTGAAGGAGAACGAGCGATGACGAAAGACAATAACCTTCT 16529 Query 476071 TGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 ||| | || | || || || || || ||||| | ||||| || || ||||| || Sbjct 16528 TGGGAAGTTCGAGCTATCTGGAATCCCACCAGCTCCACGTGGAGTGCCACAGATTGAGGT 16469 Query 476131 TA 476132 || Sbjct 16468 TA 16467 Score = 113 bits (124), Expect = 3e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || |||||||| || || || |||||||| ||||| || ||||| ||||| ||| Sbjct 17475 GATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGAT 17416 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || || || ||||||||||| | || || || || || |||||||| || || Sbjct 17415 GCAGGGGCTATCGCGGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCT 17356 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAG-TAAATGTTTTAATCTTTGATTG 474912 | || |||||||| || ||||| | ||| | || ||||||| | || |||||| Sbjct 17355 ATCGCCTATGGTCTCGACAAGAAGGGT-ACAGGGGAGAGAAATGTTCTCATATTTGATCT 17297 Query 474913 TGGAGG 474918 |||||| Sbjct 17296 TGGAGG 17291 >seq1039 Length=83987 Score = 141 bits (156), Expect = 6e-28 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 ||||| ||||| || | ||||| | ||||| | ||||| | |||| ||||| | Sbjct 42627 GAAACAAAACAGTTCGCCCCGGAGGAGATTTCAGCTATGGTGCTGACCAAGATGAAGGAG 42686 Query 474701 ACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | || ||| ||||||||||| ||||||| | ||||||||| | ||||| || || || Sbjct 42687 ATTGCCGAG-TCATATCTTGGCAAAGAAGTGAAGGATGCAGTAGTCACTGTGCCTGCCTA 42745 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 ||||||||| |||| || ||||| || |||||||| |||| ||||| || || ||||| Sbjct 42746 CTTTAATGATGCTCAGCGACAAGCCACAAAAGATGCCGGAACGATTGCTGGACTGAATGT 42805 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | | || || || || |||||||| || || || | ||||| || || || || || Sbjct 42806 TGTTCGAATCATCAACGAACCAACCGCGGCGGCCATCGCTTACGGGCTGGACAAAAA 42862 >seq312 Length=170851 Score = 113 bits (124), Expect = 3e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 |||||||| | || ||| ||||||| | ||||| | | |||||||| | | ||| Sbjct 15502 AAACAATTCACCCCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 15443 Query 474707 AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAAT 474766 |||||||||||| | || || | |||| || | ||||| ||||| || || || Sbjct 15442 GAGTCATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAAC 15383 Query 474767 GATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGT 474826 ||| | || |||||||| || || ||||| || | ||||| || || || || |||| Sbjct 15382 GATGCGCAGCGTCAAGCCACAAAGGATGCTGGGACGATTGCTGGCCTAAACGTCGTACGA 15323 Query 474827 ATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || || || || | || || |||||||||||||| Sbjct 15322 ATAATCAACGAGCCCACTGCTGCTGCCATCGCATACGGTCTTGATAAGAA 15273 >seq108 Length=252160 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||| | ||||| ||||| || ||||| || || ||||||||||||||||| ||||| ||| Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| ||||| || |||| | | | || || || |||||||| || Sbjct 245009 TTAGCTTTCACATTCTCAATGGTGTCAGACGCCTCGA-CCTCGAGAGTGATAGTTTTTCC 244951 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| || ||||| || Sbjct 244950 AGTGAGAGTCTTTACAAAAATCTG 244927 >seq2031 Length=37572 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| || || |||||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| || || || | || | || | |||| || || ||||| || ||||| Sbjct 5138 TTAACATTTTCGATGGTGTCCGATGCCTCAACCT-CAAGAGTGATGGTTTTTCCAGTGAG 5196 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||| || |||||||| Sbjct 5197 AGTCTTCACAAAAATTTG 5214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267905359264832