Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1876 358 9e-94 seq1039 149 8e-31 seq108 149 8e-31 seq312 145 1e-29 seq2031 134 2e-26 seq822 134 2e-26 >seq1876 Length=42991 Score = 358 bits (396), Expect = 9e-94 Identities = 695/1013 (69%), Gaps = 10/1013 (1%) Strand=Plus/Minus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 ||||| || | |||||||| |||||||| | ||| || || || || || || ||||| Sbjct 17475 GATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGAT 17416 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGC 195825 || | ||||| |||||||| || |||| || |||| || || || |||||||| ||||| Sbjct 17415 GCAGGGGCTATCGCGGGTCTTAA-TGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGC 17357 Query 195826 AATTGCTTATGGTCTGGACAAGAACAAGGAC-GAAGATAAAAATGTATTGATCTTTGATC 195884 || || |||||||| |||||||| | || | || | |||||| | || ||||||| Sbjct 17356 TATCGCCTATGGTCTCGACAAGAAGG-GTACAGGGGAGAGAAATGTTCTCATATTTGATC 17298 Query 195885 TCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAA 195944 | || || || || ||||| || || | || | |||||||| ||| || |||||||| | Sbjct 17297 TTGGAGGGGGAACCTTTGACGTTTCCATCCTGACTATTGAAGATGGCATTTTCGAAGTGA 17238 Query 195945 AGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTC 196004 || |||||||||| || || ||||| || || || || ||||| || | || | Sbjct 17237 AGTCTACTGCTGGAGACACGCATCTTGGAGGGGAGGACTTCGACAACCGCATGGTCAACC 17178 Query 196005 A-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCT 196063 | ||||| | |||||| ||||| | |||||||| | ||||| | || Sbjct 17177 ACTTTGTGGCA-GAGTTCAAGCGAAAACACAAGAAAGACCTAAACACTAATCCGCGTGCG 17119 Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAA 196123 || | || ||| | ||||| || ||||| || || || ||||| || || | |||| Sbjct 17118 CTCAGACGTCTTCGTACTGCTTGCGAACGCGCAAAGCGTACTCTTTCATCGTCATCTCAG 17059 Query 196124 ACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGT 196183 | |||||||||| || | || || || ||||| ||||| |||| ||||||||| Sbjct 17058 GCTTCCATTGAGATTGACTCACTCTTCGAAGGCATTGATTTCTACACAAACATTACCCGT 16999 Query 196184 GCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAA 196243 || || ||||| ||| | | ||| | || | | ||||| || ||||| || Sbjct 16998 GCCCGGTTTGAGGAGCTTTGTGCCGATCTCTTCCGTTCGACCATGGACCCAGTTGAG-AA 16940 Query 196244 GTACTTC-GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGG 196302 || || | || || || ||||| ||| | |||| | || ||||| ||||| ||||| Sbjct 16939 GTCTCTCAGAGATGCCAAAATGGACAAGAGTCAGGTGAACGACATTGTACTTGTTGGAGG 16880 Query 196303 ATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTT 196362 || || |||||||| || | || | | || ||| | ||| | || || | Sbjct 16879 CTCGACGCGTATTCCTAAAGTGCAGAAACTTCTGTCTGATCTGTTCTCTGGAAAGGAACT 16820 Query 196363 AAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTAT 196422 ||||| | |||||||| |||||||| || ||||||||||| || || ||||| || || Sbjct 16819 GAACAAGTCCATCAACCCAGATGAAGCTGTCGCTTATGGTGCTGCTGTGCAGGCCGCCAT 16760 Query 196423 TCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 || ||||| | | | | | |||||||||||||| || |||||||| || || | Sbjct 16759 CCTTTCAGGCGATAAATCTGAAGCGGTCCAAGATCTTCTTCTTCTTGATGTCGCTCCACT 16700 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 || || ||| |||| || || || ||||||||||| | ||| | |||||||| || Sbjct 16699 CTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACCGCTTTGATTAAGAGGAACACCAC 16640 Query 196543 TATTCCGACTAAGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGTGTTC 196601 || || || ||| | | | || | ||| | || || ||||| || ||||| || || Sbjct 16639 AATCCCTACAAAG-ACAAGCCAGACGTTTACGACATACTCCGACAACCAACCCGGGGTAT 16581 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661 || || || | |||||||||||| | | || || || | || ||||| | | Sbjct 16580 TGATCCAGGTCTTTGAAGGAGAACGAGCGATGACGAAAGACAATAACCTTCTTGGGAAGT 16521 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 |||| | | || || ||| | || || | || || ||||||||| | ||| Sbjct 16520 TCGAGCTATCTGGAATCCCACCAGCTCCACGTGGAGTGCCACAGATTGAGGTT 16468 >seq1039 Length=83987 Score = 149 bits (164), Expect = 8e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 195620 AAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCG 195679 ||||| || || || || || ||||| |||||||| ||| ||||||||||||| ||| Sbjct 42633 AAACAGTTCGCCCCGGAGGAGATTTCAGCTATGGTGCTGACCAAGATGAAGGAGATTGCC 42692 Query 195680 GAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGT 195739 || || | | || ||| ||||| |||||||| || ||||| ||||| ||||| | | Sbjct 42693 GAGTCATATCTTGGCAAAGAAGTGAAGGATGCAGTAGTCACTGTGCCTGCCTACTTTAAT 42752 Query 195740 GATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGA 195799 ||| | || ||||| || ||||| || || | | ||||| || || || | || || Sbjct 42753 GATGCTCAGCGACAAGCCACAAAAGATGCCGGAACGATTGCTGGACTGAATGTTGTTCGA 42812 Query 195800 ATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || ||||| |||||||| ||||| || || ||||| || |||||||| || Sbjct 42813 ATCATCAACGAACCAACCGCGGCGGCCATCGCTTACGGGCTGGACAAAAA 42862 >seq108 Length=252160 Score = 149 bits (164), Expect = 8e-31 Identities = 118/142 (83%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || || ||||||||||||||||| |||||||| ||| |||| Sbjct 244924 ATGCAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCT 244983 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 244984 GACACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 245043 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||||| ||||| ||||||| Sbjct 245044 CAACGACTGATTTTCGCTGGTA 245065 Score = 147 bits (162), Expect = 3e-30 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || ||||| || || || |||||||||||||| ||| | || Sbjct 244616 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244675 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||||||||||| |||||||||||||| ||||| || || ||| Sbjct 244676 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244735 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| ||||| |||||| Sbjct 244736 CAACGACTGATTTTCGCTGGT 244756 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || ||||| || || || |||||||||||||| ||| | || Sbjct 244307 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244366 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||||||||||| |||||||||||||| ||||| || || ||| Sbjct 244367 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244426 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| || || || ||| Sbjct 244427 CAACGACTGATCTTCGCAGGT 244447 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||||| || |||||||| |||||||| || || || || |||||||| ||| | || Sbjct 243999 TATGCAAATTTTCGTGAAAACTCTTACTGGTAAGACAATTACACTCGAGGTCGAGGCATC 244058 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || ||| | ||||||||||| ||||| || ||||| ||||| || || || Sbjct 244059 TGACACGATAGAGAACGTGAAAGCCAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCA 244118 Query 171981 GCAACGACTTATTTTTGCTGGT 172002 ||||||||| || || || ||| Sbjct 244119 GCAACGACTGATCTTCGCAGGT 244140 >seq312 Length=170851 Score = 145 bits (160), Expect = 1e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 195619 GAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGC 195678 ||||||||| | || |||||||||||| |||||||| || || |||||||||| ||| Sbjct 15503 GAAACAATTCACCCCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGC 15444 Query 195679 GGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 ||| || | | || || ||||| |||| ||||| ||||| || || ||||||| Sbjct 15443 GGAGTCATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAA 15384 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA- 195797 ||| | || || || || |||||||| |||| | ||||| || |||||| ||| || Sbjct 15383 CGATGCGCAGCGTCAAGCCACAAAGGATGCTGGGACGATTGCTGGCCTAAAC-GTCGTAC 15325 Query 195798 GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| || || || || ||||| || || || ||||| || ||||| Sbjct 15324 GAATAATCAACGAGCCCACTGCTGCTGCCATCGCATACGGTCTTGATAAGAA 15273 >seq2031 Length=37572 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||||| |||||||| || || ||||||||||| ||||| || ||||||||| | || Sbjct 5218 TATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTTGAGGTTGAGGCATC 5159 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| ||||| || | ||||| ||||| ||||| || || || || || |||||||| Sbjct 5158 GGACACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGTATCCCTCCCGATCA 5099 Query 171981 GCAACGACTTATTTTTGCTGGT 172002 |||||| || || || |||||| Sbjct 5098 GCAACGTCTAATCTTCGCTGGT 5077 >seq822 Length=101035 Score = 134 bits (148), Expect = 2e-26 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171858 TAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTC 171917 ||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||| || | Sbjct 45230 TAGCATGCAAATCTTTGTGAAAACGCTTACTGGCAAAACGATCACACTCGAGGTGGAAGC 45289 Query 171918 GTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGA 171977 ||| || || || || || | || || ||||| || |||||||| || || ||||| || Sbjct 45290 GTCCGATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGA 45349 Query 171978 TCAGCAACGACTTATTTTTGCTGGTAA 172004 |||||| |||| ||||| || ||||| Sbjct 45350 TCAGCAGAGACTGATTTTCGCAGGTAA 45376 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| || |||||||| || || || ||||| || || | || Sbjct 45535 ATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTCG 45594 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || |||| || |||||||| ||||| ||||| || ||||| |||||| Sbjct 45595 GATACAATTGAGAATGTCAAGGCGAAGATTCAGGATAAAGAAGGGATCCCACCGGATCAG 45654 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || | || ||||| || ||||| Sbjct 45655 CAGAGGCTGATTTTCGCAGGTAA 45677 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| || |||||||| || || || ||||| || || | || Sbjct 45835 ATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTCG 45894 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || |||| || |||||||| || ||||| || || ||||| |||||| Sbjct 45895 GATACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCTGATCAG 45954 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || | |||||||| || ||||| Sbjct 45955 CAGAGGCTTATTTTCGCAGGTAA 45977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657809902580480