Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq822 114 2e-20 >seq822 Length=101035 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| || | ||| ||||| || || ||||| |||||||| || ||||| Sbjct 47215 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTTT 47156 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || || | ||| ||| || || |||| ||||||||||| ||||| || || || || Sbjct 47155 GTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGTA 47096 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 ||||||||||||||||| ||||| Sbjct 47095 AGCGTTTTTACAAATATCTGCAT 47073 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 |||| ||| | || || || ||||| | |||||| |||||||| || ||||| || ||| Sbjct 45388 TCGTATAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTA 45329 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | |||| |||||||||||| | || || || || || || Sbjct 45328 TCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATC 45269 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || |||||||| ||||| |||||||| Sbjct 45268 GTTTTGCCAGTAAGCGTTTTCACAAAGATTTGCAT 45234 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | ||||| ||||| || || || ||||||||||| || || || Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | ||| ||| ||||| || | || ||||| ||||| || || || || ||| Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| ||||||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCATT 45534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899582607578880