Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq108 93.3 6e-14 seq822 89.7 8e-13 >seq108 Length=252160 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||||||||| || | || ||||| | ||| Sbjct 244924 ATGCAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCT 244983 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||| || |||||||| ||||| || |||||||| || Sbjct 244984 GACACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 245043 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||| || |||||| || |||| ||| Sbjct 245044 CAACGACTGATTTTCGCTGGTATGCA 245069 >seq822 Length=101035 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || ||||| || || ||||||||||| || | ||| Sbjct 47073 ATGCAGATATTTGTAAAAACGCTTACGGGAAAGACCATAACATTAGAAGTTGAGGCTTCG 47132 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| | ||||| || |||||||| || || || ||||| || Sbjct 47133 GACACCATTGAGAATGTGAAGACAAAAATCCAGGATAAAGAGGGAATCCCACCAGATCAG 47192 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 || | ||||||| || |||||| Sbjct 47193 CAGCGTTTGATTTTCGCGGGTAAG 47216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731813596614400