Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq109 118 3e-21 >seq109 Length=251363 Score = 118 bits (130), Expect = 3e-21 Identities = 229/336 (68%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACCATTCCTCT--TGCCACC 156067 |||||| | ||| |||||| ||||| || |||||| || | || | | |||| || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGA 156127 ||||| || || |||||||| || ||| | || | || ||| |||| | |||||||| Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 156128 AGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCC 156187 ||||| || || |||| ||| ||||||| | |||| ||||| | | | || Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 156188 AATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 || || || | | || || ||| |||| |||| ||| | |||| ||||||| | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||| ||||| || ||| | | ||| | || || | || || | | ||||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 |||||| || | ||| |||| ||||||| | ||||| Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATA 60665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471697212679408