Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq835 114 2e-19 seq2146 109 7e-18 seq283 109 7e-18 seq2053 96.9 4e-14 seq4404 93.3 5e-13 >seq835 Length=99333 Score = 114 bits (126), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| | || ||||||||||| ||||| | | || Sbjct 12949 GCTTGGCGAGCTCTCCTGGGAGGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGA 13008 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||||| ||||||| ||||| ||||| | | | || || |||| | Sbjct 13009 TGGTCGATCGTTTGTTGTAGTGCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAAGA 13068 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||||||||||| |||||||| | | || | ||| |||||| | Sbjct 13069 CGTCGTTCACAAACGAGTTCATGATCGACATCGCCCTTGACGACACTCCCGTGTCGGGAT 13128 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAA 1254550 | ||||||||||| || ||||||||| Sbjct 13129 GAACCTGCTTGAGTACGCGGTAGATGAA 13156 Score = 113 bits (124), Expect = 6e-19 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| | || ||||||||||| ||||| | | || Sbjct 1407 GCTTGGCAAGCTCTCCTGGGAGGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGA 1466 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||||| ||||||| ||||| ||||| | | | || || |||| | Sbjct 1467 TGGTCGATCGTTTGTTGTAGTGCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAAGA 1526 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCG-ACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||| |||||||||||||||| |||||||| |||| || | ||| |||||| Sbjct 1527 CGTCGTTCACAAACGAGTTCATGATCGACATCGCGCTTG-ACGACACTCCCGTGTCGGGA 1585 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAA 1254550 || ||||||||||| || ||||||||| Sbjct 1586 TGGACCTGCTTGAGTACGCGGTAGATGAA 1614 Score = 105 bits (116), Expect = 8e-17 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | |||||| | || ||||||||||| ||||| | | || Sbjct 90985 GCTTGGCGAGTTCTCCCGGGAGGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGA 90926 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||| ||||||| ||||| ||||| || | || || |||| | Sbjct 90925 TGGTCGATCGTTTGACGCAGTGCGCAAGACGCGAAGCCTCAGTAGCAATACGTTCGAAGA 90866 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGT--CGGG 1254520 |||||| |||||||||||||||| |||||||| ||| || ||| | | ||| |||| Sbjct 90865 CGTCGTTCACAAACGAGTTCATGATCGACATCGCCTT--TGAAGACACTCCCGTATCGGG 90808 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATGA 1254549 | ||||||||||| || |||||||| Sbjct 90807 ACGAACCTGCTTGAGAACGCGGTAGATGA 90779 Score = 105 bits (116), Expect = 8e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| | || ||||||||||| ||||| | | || Sbjct 95631 GCTTGGCGAGCTCTCCTGGGAGGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGA 95690 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||||| ||||||| ||||| ||||| | | | || || |||| || Sbjct 95691 TGGTCGATCGTTTGTTGTAGTGCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAACA 95750 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||||||||||||||| |||||||| ||| || | ||| ||||| | Sbjct 95751 CATCGTTCACAAACGAGTTCATGATCGACATCGCCTTTGACGACACTCCCGTATCGGGAT 95810 Query 1254523 GCACCTGCTTGAGCAC 1254538 | ||||||||||| || Sbjct 95811 GAACCTGCTTGAGTAC 95826 >seq2146 Length=34327 Score = 109 bits (120), Expect = 7e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || || || | | |||||| || || ||||||||||| ||||| | ||| | Sbjct 24680 TGGCGAGCTCTCCTGGAAGGATCAGTCGAACAGCGGTCTGGATTTCGCGGGAAGAGATGG 24739 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| || ||||| ||| |||| | ||||| |||| || || Sbjct 24740 TCGATCGCTTGTTGTAGTGAGCAAGACGCGAGGCTTCGGCTGCAATGCGTTCGAACACGT 24799 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| |||||||||||||||| ||||||| ||| || | || |||||| || | Sbjct 24800 CGTTCACAAACGAGTTCATGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGATGAA 24859 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || ||||||| Sbjct 24860 CTTGCTTGAGTACACGGTAGATG 24882 >seq283 Length=178855 Score = 109 bits (120), Expect = 7e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1254361 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCG 1254420 ||| |||||| || || ||||||||||| ||||| | | |||||| |||||||| Sbjct 14100 GCAGGATCAGTCGTACTGCGGTCTGGATTTCGCGGGAGGAGATCGTAGAACGCTTGTTGT 14041 Query 1254421 AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1254480 |||| || ||||| ||||||| | || || |||| | |||||| |||||||||| Sbjct 14040 AGTGAGCAAGACGTGAAGCCTCGGCAGCAATACGTTCGAATACGTCGTTCACAAACGAGT 13981 Query 1254481 TCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 |||||| |||||| | ||| || | || |||||| || || ||||||||||| Sbjct 13980 TCATGATCGACATTGCCTTCGACGAAACTCCTGTGTCGGGATGGACTTGCTTGAGCAC 13923 >seq2053 Length=37000 Score = 96.9 bits (106), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || ||||||||||| ||||| | | || Sbjct 32875 GCTTGGCAAGCTCTCCTGGGAGGATCAATCGGACAGCGGTCTGGATTTCGCGGGAGGAGA 32934 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| ||||| | | || || |||| || Sbjct 32935 TGGTTGATCGCTTGTTGTAGTGTGCAAGACGCGAAGCCTCAGCAGCAATACGTTCGAACA 32994 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| ||||| |||||||||| ||||||| ||| || | || |||||| | Sbjct 32995 CGTCGTTCACAAATGAGTTCATGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGAT 33054 Query 1254523 GCACCTGCTTGAGCAC 1254538 | ||||||||||| || Sbjct 33055 GAACCTGCTTGAGTAC 33070 >seq4404 Length=4039 Score = 93.3 bits (102), Expect = 5e-13 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 |||||| || || ||||||||||| ||||| | | ||| || |||||||| |||| Sbjct 868 GATCAGTCGGACAGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGCTTGTTGTAGTG 927 Query 1254425 CGCCAGACGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1254483 || ||||| ||||| | || || || |||| || |||||| ||||| ||||||| Sbjct 928 TGCAAGACGCGAAGCCTCAGCAGCAAATACGTTCGAACACGTCGTTCACAAATGAGTTCA 987 Query 1254484 TGACCGACATCGACTTGTTGGAGATGCCCAC----GTCGGGGTGCACCTGCTTGAGCAC 1254538 ||| ||||||| ||| || || || | |||||| || ||||||||||| || Sbjct 988 TGATGGACATCGCCTTCGACGAAATCGCCTCCGGTGTCGGGATGAACCTGCTTGAGTAC 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106615299063728