Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq108 100 3e-16 seq2031 86.0 6e-12 >seq108 Length=252160 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || ||||| ||||| || || || | Sbjct 244000 ATGCAAATTTTCGTGAAAACTCTTACTGGTAAGACAATTACACTCGAGGTCGAGGCATCT 244059 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || ||| ||||||||||||||||||||||| ||||| || || Sbjct 244060 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 244119 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||||| || || Sbjct 244120 CAACGACTGATCTTCGCAGG 244139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || || | Sbjct 244307 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244366 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || ||| ||||||||||| || |||||||| ||||| || || Sbjct 244367 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244426 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||||| || || Sbjct 244427 CAACGACTGATCTTCGCAGG 244446 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || || | Sbjct 244616 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244675 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || ||| ||||||||||| || |||||||| ||||| || || Sbjct 244676 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244735 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||| || || || Sbjct 244736 CAACGACTGATTTTCGCTGG 244755 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || |||||||| || ||||| || || || | Sbjct 244924 ATGCAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCT 244983 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| || |||||||| ||||| || || Sbjct 244984 GACACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 245043 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||| || || || Sbjct 245044 CAACGACTGATTTTCGCTGG 245063 >seq2031 Length=37572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || ||||| || || || || || || || | Sbjct 5217 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTTGAGGTTGAGGCATCG 5158 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| ||||||||||| || || ||||||||||| Sbjct 5157 GACACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGTATCCCTCCCGATCAG 5098 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| || || Sbjct 5097 CAACGTCTAATCTTCGCTGG 5078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449861698171520