Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq835 145 1e-28 seq2053 141 1e-27 seq2183 140 5e-27 seq283 136 6e-26 seq2146 131 3e-24 seq4404 118 2e-20 seq129 113 7e-19 seq1228 105 1e-16 seq1041 104 4e-16 >seq835 Length=99333 Score = 145 bits (160), Expect = 1e-28 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| || ||||||||| |||| || || || | | Sbjct 1368 TGTACTTGGTAACGGCCTTCGTGCCCTCGGAAACGGCGTGCTTGGCAAGCTCTCCTGGGA 1427 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | || ||||||||||| ||||||| | ||| || || ||||| | Sbjct 1428 GGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGTTTGTTGTAGT 1487 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| | | | || || |||| | |||||| ||||||||||||| Sbjct 1488 GCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAAGACGTCGTTCACAAACGAGTTCA 1547 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | || | ||| |||||| || ||||||||||| || Sbjct 1548 TGATCGACATCGCGCTTGACGACACTCCCGTGTCGGGATGGACCTGCTTGAGTAC 1602 Score = 145 bits (160), Expect = 1e-28 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| || ||||||||| |||| || || || | | Sbjct 12910 TGTACTTGGTAACGGCCTTCGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCTGGGA 12969 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | || ||||||||||| ||||||| | ||| || || ||||| | Sbjct 12970 GGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGTTTGTTGTAGT 13029 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| | | | || || |||| | |||||| ||||||||||||| Sbjct 13030 GCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAAGACGTCGTTCACAAACGAGTTCA 13089 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | || | ||| |||||| || ||||||||||| || Sbjct 13090 TGATCGACATCGCCCTTGACGACACTCCCGTGTCGGGATGAACCTGCTTGAGTAC 13144 Score = 145 bits (160), Expect = 1e-28 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| || ||||||||| |||| || || || | | Sbjct 95592 TGTACTTGGTAACGGCCTTCGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCTGGGA 95651 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | || ||||||||||| ||||||| | ||| || || ||||| | Sbjct 95652 GGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGTTTGTTGTAGT 95711 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| | | | || || |||| || ||||| ||||||||||||| Sbjct 95712 GCGCAAGACGCGAAGCCTCAGCGGCAATACGTTCGAACACATCGTTCACAAACGAGTTCA 95771 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| || || | ||| ||||| || ||||||||||| || Sbjct 95772 TGATCGACATCGCCTTTGACGACACTCCCGTATCGGGATGAACCTGCTTGAGTAC 95826 Score = 120 bits (132), Expect = 5e-21 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || | ||| || | |||||| |||| ||||| || | | Sbjct 91024 TGCACTTGGTAACGGCCTTCGTGCACTCGGAAATAGCGTGCTTGGCGAGTTCTCCCGGGA 90965 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | || ||||||||||| ||||||| | ||| || || ||| | Sbjct 90964 GGATCAGTCTGACTGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGTTTGACGCAGT 90905 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| || | || || |||| | |||||| ||||||||||||| Sbjct 90904 GCGCAAGACGCGAAGCCTCAGTAGCAATACGTTCGAAGACGTCGTTCACAAACGAGTTCA 90845 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACG--TCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | | || ||||| | ||||||||||| || Sbjct 90844 TGATCGACATCGCCT--TTGAAGACACTCCCGTATCGGGACGAACCTGCTTGAGAAC 90790 >seq2053 Length=37000 Score = 141 bits (156), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| |||||||| ||||| || ||| |||| || || || | | Sbjct 32836 TGTACTTGGTGACGGCCTTTGTACCCTCGGAGACAGCATGCTTGGCAAGCTCTCCTGGGA 32895 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || ||||||||||| ||||||| | ||| || |||||||| | Sbjct 32896 GGATCAATCGGACAGCGGTCTGGATTTCGCGGGAGGAGATGGTTGATCGCTTGTTGTAGT 32955 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||| | | || || |||| || |||||| ||||| ||||||| Sbjct 32956 GTGCAAGACGCGAAGCCTCAGCAGCAATACGTTCGAACACGTCGTTCACAAATGAGTTCA 33015 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| || || | || |||||| || ||||||||||| || || Sbjct 33016 TGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGATGAACCTGCTTGAGTACACGGT 33075 Query 1485710 AAA 1485712 ||| Sbjct 33076 AAA 33078 >seq2183 Length=33403 Score = 140 bits (154), Expect = 5e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||| ||| |||| || || || | | Sbjct 122 TGTACTTGGTGACGGCCTTTGTGCCCTCGGACACGGCATGCTTGGCGAGCTCTCCTGGGA 181 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||| ||||| ||||||| | |||||| |||||||| | Sbjct 182 GGATCAGTCGTACCGCGGTTTGGATTTCGCGGGAGGAGATCGTCGATCGCTTGTTGTAGT 241 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||| | | |||| || |||| | |||||| || || ||||||| Sbjct 242 GAGCAAGACGTGAAGCCTCAGCGGCGATACGTTCGAAAACGTCGTTCACGAAAGAGTTCA 301 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||||| || || | ||| |||||| || || |||||||| || Sbjct 302 TGATTGACATCGCCTTCGACGAAACGCCGGTGTCGGGATGAACTTGCTTGAGTAC 356 >seq283 Length=178855 Score = 136 bits (150), Expect = 6e-26 Identities = 172/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || || || ||||| || ||||| ||| | || || || | | ||| Sbjct 14156 TGTACTTGGTGACCGCTTTTGTGCCCTCGGACACGGCATGCTTAGCGAGCTCCCTG-GCA 14098 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||||||||| ||||||| | |||||| |||||||| | Sbjct 14097 GGATCAGTCGTACTGCGGTCTGGATTTCGCGGGAGGAGATCGTAGAACGCTTGTTGTAGT 14038 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||||| | || || |||| | |||||| ||||||||||||| Sbjct 14037 GAGCAAGACGTGAAGCCTCGGCAGCAATACGTTCGAATACGTCGTTCACAAACGAGTTCA 13978 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || | || |||||| || || ||||||||||| Sbjct 13977 TGATCGACATTGCCTTCGACGAAACTCCTGTGTCGGGATGGACTTGCTTGAGCAC 13923 >seq2146 Length=34327 Score = 131 bits (144), Expect = 3e-24 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| || || || || || |||||||| |||| || || || | | Sbjct 24638 TGTACTTGGTCACGGCTTTTGTGCCTTCGGACACGGCGTGTTTGGCGAGCTCTCCTGGAA 24697 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||||||||| ||||||| ||| || |||||||| | Sbjct 24698 GGATCAGTCGAACAGCGGTCTGGATTTCGCGGGAAGAGATGGTCGATCGCTTGTTGTAGT 24757 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||| |||| | ||||| |||| || |||||| ||||||||||||| Sbjct 24758 GAGCAAGACGCGAGGCTTCGGCTGCAATGCGTTCGAACACGTCGTTCACAAACGAGTTCA 24817 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||||| || || | || |||||| || || |||||||| || Sbjct 24818 TGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGATGAACTTGCTTGAGTAC 24872 >seq4404 Length=4039 Score = 118 bits (130), Expect = 2e-20 Identities = 176/248 (71%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||| |||||||||| || ||||| ||||| || ||| ||| || || || | Sbjct 807 TGAACTTGTTGACGGCCTTTGTGCCCTCGGAGACAGCATGCTGGGCAAGCTCTCCTAGGC 866 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||||||||| ||||||| | ||| || |||||||| | Sbjct 867 GGATCAGTCGGACAGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGCTTGTTGTAGT 926 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || || ||||| | || || || |||| || |||||| ||||| |||||| Sbjct 927 GTGCAAGACGCGAAGCCTCAGCAGCAAATACGTTCGAACACGTCGTTCACAAATGAGTTC 986 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCAC----GTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||||| || || || || | |||||| || ||||||||||| || Sbjct 987 ATGATGGACATCGCCTTCGACGAAATCGCCTCCGGTGTCGGGATGAACCTGCTTGAGTAC 1046 Query 1485705 CTTGTAAA 1485712 ||||| Sbjct 1047 ACGGTAAA 1054 >seq129 Length=239429 Score = 113 bits (124), Expect = 7e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| ||||| || || | || ||||| || | | Sbjct 105049 TGTACTTGGTTACCGCCTTGGTTCCCTCGGAGACTGCATGTTTCGCGAGTTCTCCTGGGA 104990 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | ||| ||||||||||| || |||| |||||| |||||||| | Sbjct 104989 GGATCAGTCTCACAGCGGTCTGGATTTCACGGGATGAGATCGTTGACCGCTTGTTGTAGT 104930 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | | ||||| || | | |||||||| || ||||||| Sbjct 104929 GTGCTAGACGTGACGCTTCAGCAGCAATGCGTTCAAAAACATCGTTGACGAATGAGTTCA 104870 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || ||| | || |||||| || || ||||| ||||| Sbjct 104869 TGATCGACATTGCCTTCGAGGACACACCAGTGTCGGGATGTACTTGCTTCAGCAC 104815 >seq1228 Length=72335 Score = 105 bits (116), Expect = 1e-16 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||| | |||||||||||| || ||||| || ||||| ||| | || || || | | Sbjct 24391 CGGTGTATTCGGTGACGGCCTTTGTGCCCTCGGATACGGCATGCTTAGCGAGCTCCCTG- 24449 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 ||| |||||| ||| ||||||||||| ||||||| | |||||| |||||||| Sbjct 24450 GCAAGATCAGTCGCTTAGCGGTCTGGATTTCGCGGGAGGAGATCGTCGAACGCTTGTTTT 24509 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | || | || |||||| | || || |||| | |||||| | ||||||| Sbjct 24510 AGTTAGCAAAACGTGAAACCTCGGCAGCAATACGTTCGAATACGTCGTTCAACAACGAGT 24569 Query 1485647 TCATGATCGACATCG 1485661 ||||||||||||||| Sbjct 24570 TCATGATCGACATCG 24584 >seq1041 Length=83687 Score = 104 bits (114), Expect = 4e-16 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || || || || || |||| || || || | | Sbjct 70326 TGTACTTGGTCACAGCCTTTGTGCCTTCGGATACCGCATGTTTGGCGAGCTCTCCTGGTA 70267 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| ||||||||||| |||| |||||| ||||| || || | Sbjct 70266 AAATGAGGCGAACGGCCGTCTGGATCTCTCGGGACGAAATCGTGGATCGCTTATT-GTAC 70208 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || ||| || || | | | || || || | | ||| || || ||||||||| Sbjct 70207 TGAGCAAGACGGGACGCTTCAGCGGCAATACGCTCAAATACGTCATTAACGAACGAGTTC 70148 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || || ||||| | |||| ||||| ||| |||||| || || ||||| || || Sbjct 70147 ATAATGGACATAGCTTTGGAGGAGACGCCTGTGTCGGGATGGACTTGCTTCAGGAC 70092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915567304802576