Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq108 102 5e-17 >seq108 Length=252160 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||||||||||||||||| | || | || ||||| || | || || | Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||| ||||| || Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||||||| Sbjct 244326 GTCTTCACGAAGATCTGCATG 244306 Score = 98.7 bits (108), Expect = 6e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889 || ||| || ||||| |||||||||||||||||| | || | || ||||| || | | Sbjct 244763 GTAGCTCACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGA 244704 Query 34890 TTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949 | || ||| ||| |||||| ||| |||||||| || | ||| |||||||| | Sbjct 244703 TCTTGGCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCC 244644 Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || ||||| || |||||||||||| Sbjct 244643 CCGTAAGCGTCTTCACGAAGATCTGCATG 244615 Score = 84.2 bits (92), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||| | || ||||| |||||||||||||||||| | || | || ||||| || | || Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010 Query 34892 TTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949 || ||| || || || || | ||| |||||||| || | || || || |||| Sbjct 245009 TTAGCTTTCAC--ATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTC 244952 Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | ||||| ||||||||||| ||||||||| Sbjct 244951 CAGTGAGAGTCTTTACAAAAATCTGCATG 244923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325667459471696