Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq108 102 5e-17
>seq108
Length=252160
Score = 102 bits (112), Expect = 5e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||||||||||||||||| | || | || ||||| || | || || |
Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| |||||| ||| |||||||| || | ||| |||||||| ||||| ||
Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327
Query 34958 GTCTTTACAAAGATCTGCATG 34978
||||| || ||||||||||||
Sbjct 244326 GTCTTCACGAAGATCTGCATG 244306
Score = 98.7 bits (108), Expect = 6e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889
|| ||| || ||||| |||||||||||||||||| | || | || ||||| || | |
Sbjct 244763 GTAGCTCACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGA 244704
Query 34890 TTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949
| || ||| ||| |||||| ||| |||||||| || | ||| |||||||| |
Sbjct 244703 TCTTGGCTTTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCC 244644
Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||| || ||||| || ||||||||||||
Sbjct 244643 CCGTAAGCGTCTTCACGAAGATCTGCATG 244615
Score = 84.2 bits (92), Expect = 1e-11
Identities = 109/149 (73%), Gaps = 4/149 (3%)
Strand=Plus/Minus
Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891
||| | || ||||| |||||||||||||||||| | || | || ||||| || | ||
Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010
Query 34892 TTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949
|| ||| || || || || | ||| |||||||| || | || || || ||||
Sbjct 245009 TTAGCTTTCAC--ATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTC 244952
Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| ||||| ||||||||||| |||||||||
Sbjct 244951 CAGTGAGAGTCTTTACAAAAATCTGCATG 244923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325667459471696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |