Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1876 250 2e-60 seq312 98.7 7e-15 >seq1876 Length=42991 Score = 250 bits (276), Expect = 2e-60 Identities = 675/1020 (66%), Gaps = 26/1020 (3%) Strand=Plus/Plus Query 281468 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT---TAAATGTT 281524 || ||||| || || || || | |||| |||||||| |||| || | | || Sbjct 16469 ACCTCAATCTGTGGCACTCCACGTGGAGCTGGTGGGAT----TCCAGATAGCTCGAACTT 16524 Query 281525 CCCA-GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAAC 281583 |||| || ||||| ||||| || | |||||| || || || | ||||| || Sbjct 16525 CCCAAGAAGGTTATTGTCTTTCGTCATCGCTCGTTCTCCTTCAAAGACCTGGATCAATAC 16584 Query 281584 TACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTG 281642 | | ||| || || || || || ||||| ||||| || | || ||| ||||| | Sbjct 16585 CCCGGGTTGGTTGTCGGAGTATGTCGTAAACG-TCTGGCTTGTCTTTGTAGGGATTGTGG 16643 Query 281643 TGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAG 281702 |||| || | ||| | | |||||||| ||| ||||| || || | |||||| || || | Sbjct 16644 TGTTCCTCTTAATCAAAGCGGTCATAACACCTCCAGCAGTCTCAATACCAAGCGAGAGTG 16703 Query 281703 GAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAG 281762 ||| |||||||| || | || || ||| | |||| | | || ||| || | Sbjct 16704 GAGCGACATCAAGAAGAAGAAGATCTTGGACCGCTTCAGATTTATCGCCTGAAAGGATGG 16763 Query 281763 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 281822 | || || | |||||||||||| || ||||||||||| || || | | | || |||| Sbjct 16764 CGGCCTGCACAGCAGCACCATAAGCGACAGCTTCATCTGGGTTGATGGACTTGTTCAGTT 16823 Query 281823 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCT 281881 || ||| ||| | || || ||||||| ||| || ||||||||||| | || ||| Sbjct 16824 CCTTTCCAGAGAACAGATCAGACAGAAGTT-TCTGCACTTTAGGAATACGCGTCGAGCCT 16882 Query 281882 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 281941 ||||| | |||||| || | |||||| || |||| ||| | ||| | | || Sbjct 16883 CCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGGCATCTCTGAGAGACTTC 16942 Query 281942 TCAAC-GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCT 282000 ||||| |||| || | | | | || | || | |||||| || || || || | Sbjct 16943 TCAACTGGGTCCATGGTC-GAACGGAAGAGATCGGCACAAAGCTCCTCAAACCGGGCACG 17001 Query 282001 AGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG 282060 |||| | | ||||||| |||||||| | || |||| ||||| | || || Sbjct 17002 GGTAATGTTTGTGTAGAAATCAATGCCTTCGAAGAGTGAGTCAATCTCAATGGAAGCCTG 17061 Query 282061 AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 282120 || || || || || | ||| || || ||||| || || || | || | || | || Sbjct 17062 AGATGACGATGAAAGAGTACGCTTTGCGCGTTCGCAAGCAGTACGAAGACGTCTGAGCGC 17121 Query 282121 TTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 282178 || |||| | | | ||| | || | ||||| |||||| ||| | ||| | Sbjct 17122 AC--GCGGATTAGTGTTTAGGTCTTTCTTGTGTTTTCGCTTGAACTCTGCCACAAAGTGG 17179 Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 | || | || || || || || || ||||| | | || | ||| | |||| | Sbjct 17180 TTGACCATGCGGTTGTCGAAGTCCTCCCCTCCAAGATGCGTGTCTCCAGCAGTAGACTTC 17239 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 |||| ||||| |||||||||| || || | | ||| ||| |||||| || || | | Sbjct 17240 ACTTCGAAAATGCCATCTTCAATAGTCAGGATGGAAACGTCAAAGGTTCCCCCTCCAAGA 17299 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGG----TTTTTATCAAGACCATACGCAAA 282354 ||||| || || ||||| ||| | | || || || || |||||||| || | Sbjct 17300 TCAAATATGAGAACATT----TCTCTCCCCTGTACCCTTCTTGTCGAGACCATAGGCGAT 17355 Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||||||| ||||| || || || |||| | ||||||||||| || || ||||| Sbjct 17356 AGCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACATTAAGACCCGCGATAGCCCCTGC 17415 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||| ||||| ||||| | || || || ||||| || || || |||||||| |||||||| Sbjct 17416 ATCCTTAGTAGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGTACAGTAATGACGGCATC 17475 >seq312 Length=170851 Score = 98.7 bits (108), Expect = 7e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||||||||| || || | ||||||||||| || || || || |||| | || Sbjct 15273 TTCTTATCAAGACCGTATGCGATGGCAGCAGCAGTGGGCTCGTTGATTATTCGTACGACG 15332 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || ||||| || |||||||| | || | |||||| || || Sbjct 15333 TTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGCTGCGCATCGTTGAAGTAC 15392 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || || ||||| | ||| |||| | || || ||||||| ||| Sbjct 15393 GCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATA 15436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740316972578784