Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq5891 84.2 3e-11 seq6372 82.4 1e-10 seq6252 82.4 1e-10 seq6034 82.4 1e-10 seq4415 82.4 1e-10 >seq5891 Length=706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| Sbjct 126 TTGTTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCA 67 Query 8714 ATTCCCCGACGAGGAG 8729 |||||| | || |||| Sbjct 66 ATTCCCGGCCGGGGAG 51 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| Sbjct 294 TTGTTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCA 235 Query 8714 ATTCCCCGACGAGGAG 8729 |||||| | || |||| Sbjct 234 ATTCCCGGCCGGGGAG 219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| Sbjct 630 TTGTTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCA 571 Query 8714 ATTCCCCGACGAGGAGCAG 8732 ||||| |||| |||| || Sbjct 570 ATTCCTGGACGGGGAGAAG 552 >seq6372 Length=502 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 141 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 82 Query 8717 CCCCGACGAGGAG 8729 || | ||||||| Sbjct 81 TCCGGCCGAGGAG 69 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 478 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 419 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 418 CCCGGCCGGGGAG 406 >seq6252 Length=542 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 190 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 249 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 250 CCCGGCCGGGGAG 262 >seq6034 Length=641 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 85 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 144 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 145 CCCGGCCGGGGAG 157 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 253 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 312 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 313 CCCGGCCGGGGAG 325 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 410 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 469 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 470 CCCGGCCGGGGAG 482 >seq4415 Length=3981 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| | |||||||| || | |||||| |||||| ||| Sbjct 356 TTCCTCGGTAGTATAGTGGTTAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATT 297 Query 8717 CCCCGACGAGGAG 8729 ||| | || |||| Sbjct 296 CCCAGCCGGGGAG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652792702984960