Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq835 120 4e-21 seq283 120 4e-21 seq2146 114 2e-19 seq2183 111 2e-18 seq4404 102 1e-15 seq2053 102 1e-15 seq129 93.3 6e-13 seq1228 89.7 7e-12 >seq835 Length=99333 Score = 120 bits (132), Expect = 4e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| ||||| || |||| || || | | | ||| Sbjct 95787 AAGGCGATGTCGATCATGAACTCGTTTGTGAACGATGTGTTCGAACGTATTGCCGCTGAG 95728 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || |||| || |||||| || || ||| | | ||||| ||||||||| Sbjct 95727 GCTTCGCGTCTTGCGCACTACAACAAACGATCGACCATCTCCTCCCGCGAAATCCAGACC 95668 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | |||||| | | || || || |||| ||||||||| ||||||||||| Sbjct 95667 GCAGTCAGACTGATCCTCCCAGGAGAGCTCGCCAAGCACGCCGTTTCCGAGGGCAC 95612 Score = 118 bits (130), Expect = 2e-20 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||| |||||| | |||| || || | | | ||||| Sbjct 1557 ATGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAACGTATTGCCGCTGAGGCTTCG 1498 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| || |||||| || || ||| | | ||||| ||||||||||| || Sbjct 1497 CGTCTTGCGCACTACAACAAACGATCGACCATCTCCTCCCGCGAAATCCAGACCGCAGTC 1438 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||| | | || || || |||| ||||||||| ||||||||||| Sbjct 1437 AGACTGATCCTCCCAGGAGAGCTTGCCAAGCACGCCGTTTCCGAGGGCAC 1388 Score = 118 bits (130), Expect = 2e-20 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||| |||||| | |||| || || | | | ||||| Sbjct 13099 ATGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAACGTATTGCCGCTGAGGCTTCG 13040 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| || |||||| || || ||| | | ||||| ||||||||||| || Sbjct 13039 CGTCTTGCGCACTACAACAAACGATCGACCATCTCCTCCCGCGAAATCCAGACCGCAGTC 12980 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||| | | || || || |||| ||||||||| ||||||||||| Sbjct 12979 AGACTGATCCTCCCAGGAGAGCTCGCCAAGCACGCCGTTTCCGAGGGCAC 12930 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| |||||| | |||| || || | || ||| Sbjct 90829 AAGGCGATGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAACGTATTGCTACTGAG 90888 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || |||| || | ||| || || ||| | | ||||| ||||||||| Sbjct 90889 GCTTCGCGTCTTGCGCACTGCGTCAAACGATCGACCATCTCCTCCCGCGAAATCCAGACC 90948 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | |||||| | | || ||||| |||| |||||| | |||||| |||| Sbjct 90949 GCAGTCAGACTGATCCTCCCGGGAGAACTCGCCAAGCACGCTATTTCCGAGTGCAC 91004 >seq283 Length=178855 Score = 120 bits (132), Expect = 4e-21 Identities = 133/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| |||||| | |||| || || | ||||| Sbjct 13962 AAGGCAATGTCGATCATGAACTCGTTTGTGAACGACGTATTCGAACGTATTGCTGCCGAG 14021 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || || | || ||||||||| |||||| | | ||||| ||||||||| Sbjct 14022 GCTTCACGTCTTGCTCACTACAACAAGCGTTCTACGATCTCCTCCCGCGAAATCCAGACC 14081 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || |||||| ||| | | || || || | ||| ||||| ||||||||||| Sbjct 14082 GCAGTACGACTGATCCTGC-CAGGGAGCTCGCTAAGCATGCCGTGTCCGAGGGCAC 14136 >seq2146 Length=34327 Score = 114 bits (126), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||||||||| |||||| || |||| ||||| | |||| Sbjct 24833 AAGGCGATGTCCATCATGAACTCGTTTGTGAACGACGTGTTCGAACGCATTGCAGCCGAA 24774 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| || || || | || ||||||||| || ||| | ||||| ||||||||| Sbjct 24773 GCCTCGCGTCTTGCTCACTACAACAAGCGATCGACCATCTCTTCCCGCGAAATCCAGACC 24714 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || |||||| | | || || || |||| |||||||| ||||| ||||| Sbjct 24713 GCTGTTCGACTGATCCTTCCAGGAGAGCTCGCCAAACACGCCGTGTCCGAAGGCAC 24658 >seq2183 Length=33403 Score = 111 bits (122), Expect = 2e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||| || || |||||| | |||| || |||| | | ||| Sbjct 317 AAGGCGATGTCAATCATGAACTCTTTCGTGAACGACGTTTTCGAACGTATCGCCGCTGAG 258 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || || | || ||||||||| |||||| | | ||||| ||||| ||| Sbjct 257 GCTTCACGTCTTGCTCACTACAACAAGCGATCGACGATCTCCTCCCGCGAAATCCAAACC 198 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || |||||| | | || || || |||| ||| ||||| ||||||||||| Sbjct 197 GCGGTACGACTGATCCTCCCAGGAGAGCTCGCCAAGCATGCCGTGTCCGAGGGCAC 142 >seq4404 Length=4039 Score = 102 bits (112), Expect = 1e-15 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| || ||| |||| || | || || ||| | ||||| ||| Sbjct 1046 GTACTCAAGCAGGTTCATCCCGACACCGGAGG-CGATT-TCGTCGAAGGCGATGTCCATC 989 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC-GAGGCCGGTCGCCTGGC 725038 |||||||| ||||| |||||| || |||| || || || | ||||| || || || Sbjct 988 ATGAACTCATTTGTGAACGACGTGTTCGAACGTATTTGCTGCTGAGGCTTCGCGTCTTGC 929 Query 725039 GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGAT 725098 | || ||||||||| || ||| | | ||||| ||||||||||| || || ||||| Sbjct 928 ACACTACAACAAGCGATCGACCATCTCCTCCCGCGAAATCCAGACCGCTGTCCGACTGAT 869 Query 725099 CATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | | || || || ||| ||| || |||||||||||||| Sbjct 868 CCGCCTAGGAGAGCTTGCCCAGCATGCTGTCTCCGAGGGCAC 827 >seq2053 Length=37000 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||| ||||| |||||| || |||| || || | | ||| Sbjct 33031 AAGGCGATGTCCATCATGAACTCATTTGTGAACGACGTGTTCGAACGTATTGCTGCTGAG 32972 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || || | || ||||||||| || ||| | | ||||| ||||||||| Sbjct 32971 GCTTCGCGTCTTGCACACTACAACAAGCGATCAACCATCTCCTCCCGCGAAATCCAGACC 32912 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||||| | | || || || |||| ||| || ||||||||||| || Sbjct 32911 GCTGTCCGATTGATCCTCCCAGGAGAGCTTGCCAAGCATGCTGTCTCCGAGGGTAC 32856 >seq129 Length=239429 Score = 93.3 bits (102), Expect = 6e-13 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||| ||||| || || ||| || | || | ||||| || | | ||||||||| Sbjct 104815 GTGCTGAAGCAAGTACATCCCGACACTGGTGTG---TCCTCGAA---GGCAATGTCGATC 104868 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||| || |||||||| | | || ||||| | | || || || || || Sbjct 104869 ATGAACTCATTCGTCAACGATGTTTTTGAACGCATTGCTGCTGAAGCGTCACGTCTAGCA 104928 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || ||||||||| |||||| | || || ||||||||||| ||| | |||||| Sbjct 104929 CACTACAACAAGCGGTCAACGATCTCATCCCGTGAAATCCAGACCGCTGTGAGACTGATC 104988 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || ||||| || | || || ||||||||||| |||| Sbjct 104989 CTCCCAGGAGAACTCGCGAAACATGCAGTCTCCGAGGGAACCA 105031 >seq1228 Length=72335 Score = 89.7 bits (98), Expect = 7e-12 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | |||||||||||||||||||| | |||||| | |||| || || | ||||| Sbjct 24588 AAGGCGATGTCGATCATGAACTCGTTGTTGAACGACGTATTCGAACGTATTGCTGCCGAG 24529 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | || | || || |||||||| |||||| | | ||||| ||||||||| Sbjct 24528 GTTTCACGTTTTGCTAACTAAAACAAGCGTTCGACGATCTCCTCCCGCGAAATCCAGACC 24469 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| |||||| ||| | | || || || | ||| ||||| ||||||||||| Sbjct 24468 GCTAAGCGACTGATCTTGC-CAGGGAGCTCGCTAAGCATGCCGTATCCGAGGGCAC 24414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177195451466208