Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq822 107 2e-18 seq108 86.0 6e-12 seq109 84.2 2e-11 >seq822 Length=101035 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||||| | | | || ||||| ||||||| | ||||||||| || || || |||||||| Sbjct 45690 GTCGTGAAACAGGTTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTT 45631 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || ||||| || ||||| || | ||| || || | |||||| ||||||||||| Sbjct 45630 ATCCTGAATCTTCGCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAAT 45571 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || || |||| |||||| || || ||||||||| Sbjct 45570 GGTCTTTCCAGTTAGAGTTTTCACAAAGATTTGCATT 45534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||| ||||| | | ||||||||| || || || || || || || ||||| || Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||| || || | |||||| |||||||||||||| || || ||| Sbjct 45917 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45858 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | |||||| || || ||||||||| Sbjct 45857 AGAGTTTTCACAAAGATTTGCATT 45834 >seq108 Length=252160 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || |||| || ||||| || || || || |||||||| ||||| || || | Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | || || ||||| ||||| || ||||| || | | Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| |||||||||||||| Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000 >seq109 Length=251363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 290/445 (65%), Gaps = 13/445 (3%) Strand=Plus/Minus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 ||| |||||| ||||||||||| |||| || ||||| || ||||| ||||| || || Sbjct 60765 CGCTGAACGACCACAACACATGCTTATGCGGGTTGCGGTCGGTATTCATGGCGAGGATAT 60706 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA--ACAGTTTACGCACGCTTCG 7668 || || || | ||||||||| | | ||| |||| | | || || || || || Sbjct 60705 CGATGCAGCTATTGAAACGTACAATCTAATG--AGTGAACGATATTTCACTCATGCATCA 60648 Query 7669 CCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACC 7728 || || |||||| ||| || ||| ||| || | || || |||||| || | || Sbjct 60647 CCAACAATGTTTAACGCTGGAACACTATGGCCGCAGCTTTCATCATGTTTTCTGTTGACG 60588 Query 7729 ATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTG-CGCGAT-TGCGCCAATATTT 7786 ||| | || || || | ||| ||||| | || || || || ||| | ||||| Sbjct 60587 ATGAGTGAGGATTCGATTGCCGGTATTTATGATACATTGAAGCAATGTGCTCTAATAT-- 60530 Query 7787 CCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGC 7845 | || | || || ||||| ||| |||||||| | | | || |||| ||| Sbjct 60529 -CGAAGAGTGCTGGAGGAATCGGTTTGAACGTACATAAAATTCGGGCCACTGGTTCTTTG 60471 Query 7846 ATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAAC 7905 || | ||| ||||| | | ||| || || | || ||||| ||||| | ||| || Sbjct 60470 ATTGGCGGCACAAACGGCACATCCAATGGGTTGGTTCCAATGTTACGCGTATACAACAAT 60411 Query 7906 GCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTG 7962 | | ||| | || || || || || || || ||| || ||| |||||| | Sbjct 60410 ACTGCTCGATACGTTGATCAAGGCGGCAATAAACGACCAGGAGCTTTTGCAATCTATCTC 60351 Query 7963 GAGCCGTGGCACGCGGACATTTACG 7987 ||||| ||||| || || |||| || Sbjct 60350 GAGCCATGGCATGCAGATATTTTCG 60326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505358069207680