Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq109 183 4e-41 >seq109 Length=251363 Score = 183 bits (202), Expect = 4e-41 Identities = 304/439 (69%), Gaps = 0/439 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | |||||| | ||||||||| || ||||| || || | |||| |||||||||| Sbjct 60323 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTAT 60382 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || || ||||| | ||||| ||||| || || || || | | ||| |||| | | Sbjct 60383 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 60442 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868 |||| ||| | || ||||| || ||| || || | || ||||| ||| | Sbjct 60443 CATTGGATGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGT 60502 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | ||| |||||||| || | || || ||||||||||| | |||||||| ||||| | Sbjct 60503 TCAAACCGATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAA 60562 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 |||| | || ||| || |||| | | |||||||| || | || | || Sbjct 60563 TACCGGCAATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATA 60622 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 ||||| || ||||| | ||| || ||||| |||||||| || |||| | |||| Sbjct 60623 GTGTTCCAGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGAT 60682 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| ||||||||||||| || |||||| |||||| || | ||| || ||||| | Sbjct 60683 TGTACGTTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAA 60742 Query 70109 ACATATGCTGAGGTCGTTC 70127 ||| || || |||||||| Sbjct 60743 GCATGTGTTGTGGTCGTTC 60761 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| || || || ||||| || || || || | ||||| || |||| ||||| Sbjct 58708 AGCAGATGAGGGTTCACAATTTGGAAATCACCCGAAAGTACTCTGCGGCTGTAGATATTC 58767 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || || | ||||| || || || |||||||| || || |||||||||||| Sbjct 58768 GAAGTGTACGGCTCAATGGATTCGTTGTTGCCAAGAATTTGCGCCGTCGATGCAGTTGGC 58827 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 || ||||| | ||||||||| |||| | |||||| Sbjct 58828 ATCGGTGCAAGCAATAAACTGTTTCGTACACCATG 58862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686853984677760