Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq822 87.8 2e-12 >seq822 Length=101035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| || | ||| ||||| || || | ||||| ||||| |||||| Sbjct 45376 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 45317 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||| || | ||||| || || || || || | |||||| || Sbjct 45316 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTGCCAGTA 45257 Query 27225 AGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 || ||||||||||||||||||| |||||||| Sbjct 45256 AGCGTTTTCACAAAGATTTGCA----TGCTAAAA 45227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| || | ||| |||||||| || | || |||||||| ||||| Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | | || | || || | |||||| ||||| ||||| || | || || || Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||||||||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCAT 45535 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| | |||||| ||||| || || | ||||||||||| ||| || Sbjct 47215 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTTT 47156 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 | |||| | || | ||||| | || |||||||||| ||||| | || ||||| Sbjct 47155 GTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGTA 47096 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||| || ||||| Sbjct 47095 AGCGTTTTTACAAATATCTGCAT 47073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424901337979008