Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq109 93.3 5e-14 >seq109 Length=251363 Score = 93.3 bits (102), Expect = 5e-14 Identities = 283/434 (65%), Gaps = 5/434 (1%) Strand=Plus/Plus Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---AC 111710 |||| | ||||| || ||||||||||| ||||||| ||| | || ||| ||| | Sbjct 60323 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTAT 60382 Query 111711 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 111770 || |||||| || || || || || ||| ||||||| | |||||||| | | Sbjct 60383 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 60442 Query 111771 CATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 111830 ||| ||| || ||||| || | ||| ||| | |||| | | | ||| | || Sbjct 60443 CATTGGATGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGT 60502 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 || || || || ||||| | ||| || ||| | ||||| | | | | || |||| | Sbjct 60503 TCAAACCGATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAA 60562 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 ||||| || || ||||| | | | | || || || || | |||||| | | Sbjct 60563 TACCGGCAATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATA 60622 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGACATCTTG 112009 |||| ||||| || || | ||||||| ||| ||| |||| ||| | || ||| Sbjct 60623 GTGTTCCAGCGTTAAACATTGTTGGTGATGCATGAGTGAA-ATATCGTTCACTCATTAGA 60681 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | ||| || || | | | ||| || || || || || || |||| || |||||||| Sbjct 60682 TTGTACGTTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATA 60741 Query 112070 AACATGTACTGTGG 112083 | ||||| ||||| Sbjct 60742 AGCATGTGTTGTGG 60755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627981883046400