Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq109 93.3 5e-14 >seq109 Length=251363 Score = 93.3 bits (102), Expect = 5e-14 Identities = 283/434 (65%), Gaps = 5/434 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||| | ||||| || || ||||||||||||| || || || ||| | | Sbjct 60755 CCACAACACATGCTTATGCGGGTTGCGGTCGGTATTCATGGCGAGGATATCGATGCAGCT 60696 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || ||| | ||| || | ||| |||| ||| ||| ||||||| | || Sbjct 60695 ATTGAAACGTACAATCTAATGAGTGAACGATAT-TTCACTCATGCATCACCAACAATGTT 60637 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || ||||| |||| | | || || | || || || || | | | | ||||| Sbjct 60636 TAACGCTGGAACACTATGGCCGCAGCTTTCATCATGTTTTCTGTTGACGATGAGTGAGGA 60577 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || |||||| |||| || | | | | ||||| | ||| || ||| | ||||| Sbjct 60576 TTCGATTGCCGGTATTTATGATACATTGAAGCAATGTGCTCTAATATCGAAGAGTGCTGG 60517 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || || || | ||| | | | |||| | ||| ||| | || ||||| Sbjct 60516 AGGAATCGGTTTGAACGTACATAAAATTCGGGCCACTGGTTCTTTGATTGGCGGCACAAA 60457 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| |||| | |||||||| | ||||||| ||| || || || || || Sbjct 60456 CGGCACATCCAATGGGTTGGTTCCAATGTTACGCGTATACAACAATACTGCTCGATACGT 60397 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||||| || | ||| ||| || | ||| ||||||| ||||||||||| || Sbjct 60396 TGATCAAGGCGGCAATAAACGACCAGGAGCTTTTGCAATCTATCTCGAGCCATGGCATGC 60337 Query 104638 GGATATCATGGAGT 104651 ||||| | |||| Sbjct 60336 AGATATTTTCGAGT 60323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583214255788160