Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1876 280 4e-70 seq312 134 4e-26 seq108 118 3e-21 seq822 116 1e-20 seq2031 113 1e-19 seq1039 113 1e-19 seq274 84.2 7e-11 >seq1876 Length=42991 Score = 280 bits (310), Expect = 4e-70 Identities = 671/1011 (66%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||| || ||||||||||| || || |||||||| | ||||| || || || ||| Sbjct 17475 GATGCCGTCATTACTGTACCCGCTTACTTTAATGACTCTCAGCGCCAAGCTACTAAGGAT 17416 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || || ||||| | ||||| || |||| || || || || || ||||| || Sbjct 17415 GCAGGGGCTATCGCGGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCT 17356 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || ||||| || || || | | || || | |||| |||| || |||||| | Sbjct 17355 ATCGCCTATGGTCTCGACAAGAAGGGTACAGGGGAGAGAAATGTTCTCATATTTGATCTT 17296 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || || || ||||| || || | || || ||||||| || ||||| ||||| || Sbjct 17295 GGAGGGGGAACCTTTGACGTTTCCATCCTGACTATTGAAGATGGCATTTTCGAAGTGAAG 17236 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 | |||||||| || || |||||||| || || || || || || || | || || Sbjct 17235 TCTACTGCTGGAGACACGCATCTTGGAGGGGAGGACTTCGACAACCGCATGGTCAACCAC 17176 Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATG 349966 ||||| ||| || ||||| || || | || | |||||| | || | Sbjct 17175 TTTGTGGCAGAGTTCAAGCGAAAACACAAGAAAGACCTAAACACTAATCCGCGTGCGCTC 17116 Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026 | || || | ||||| || ||||| || |||||| | | ||||| | | || | Sbjct 17115 AGACGTCTTCGTACTGCTTGCGAACGCGCAAAGCGTACTCTTTCATCGTCATCTCAGGCT 17056 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 || ||||| ||||| || || || |||| ||||||| || ||||| ||||| Sbjct 17055 TCCATTGAGATTGACTCACTCTTCGAAGGCATTGATTTCTACACAAACATTACCCGTGCC 16996 Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 |||||||| || | ||| ||||| || | | || ||||| || || || || || Sbjct 16995 CGGTTTGAGGAGCTTTGTGCCGATCTCTTCCGTTCGACCATGGACCCAGTTGAGAA-GTC 16937 Query 350147 T-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205 | | | |||||| |||||| ||| | |||| | | || | || | ||||| || || Sbjct 16936 TCTCAGAGATGCCAAAATGGACAAGAGTCAGGTGAACGACATTGTACTTGTTGGAGGCTC 16877 Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 || |||||||| ||||| || | | || ||||| | || ||| || |||| Sbjct 16876 GACGCGTATTCCTAAAGTGCAGAAACTTCTGTCTGATCTGTTCTCTGGAAAGGAACTGAA 16817 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 | || || || |||||||||||||| || |||||||||||||| ||||| | || | Sbjct 16816 CAAGTCCATCAACCCAGATGAAGCTGTCGCTTATGGTGCTGCTGTGCAGGCCGCCATCCT 16757 Query 350326 ATCTGGAAATAAGAGTTCTAAA---ATTGATGATCTATTACTACTAGATGTAACTCCACT 350382 || || |||| ||| || | | ||||| | || || ||||| ||||||| Sbjct 16756 TTCAGGCGATAA---ATCTGAAGCGGTCCAAGATCTTCTTCTTCTTGATGTCGCTCCACT 16700 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 |||||||| | || ||| |||| | || ||||| | | | ||| || || | || Sbjct 16699 CTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACCGCTTTGATTAAGAGGAACACCAC 16640 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 | |||||||| | ||| || ||| | |||| | || || || || | |||| Sbjct 16639 AATCCCTACAAAGACAAGCCAGACGTTTACGACATACTCCGACAACCAACCCGGGGTATT 16580 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 || || || |||||||| ||||| || || ||||| ||||| ||||| | || Sbjct 16579 GATCCAGGTCTTTGAAGGAGAACGAGCGATGACGAAAGACAATAACCTTCTTGGGAAGTT 16520 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 ||| || ||| |||||| || | ||||| || |||||||| || Sbjct 16519 CGAGCTATCTGGAATCCCACCAGCTCCACGTGGAGTGCCACAGATTGAGGT 16469 >seq312 Length=170851 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579 |||||||| || ||||||||||| | ||||| | | ||||||||||| ||||| Sbjct 15502 AAACAATTCACCCCTGAAGAAATTTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 15443 Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639 || ||||| | || | || | |||||||| | ||||| ||||| || || || Sbjct 15442 GAGTCATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAAC 15383 Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699 ||||| |||||| || ||||| |||||||| | ||||| || |||| || || || Sbjct 15382 GATGCGCAGCGTCAAGCCACAAAGGATGCTGGGACGATTGCTGGCCTAAACGTCGTACGA 15323 Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || || ||||||||||| || || ||||| || |||||||| Sbjct 15322 ATAATCAACGAGCCCACTGCTGCTGCCATCGCATACGGTCTTGATAA 15276 Score = 105 bits (116), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311 || || ||||| || ||||| ||||| || ||||||||||| || ||||||| |||| Sbjct 14571 GCCTGGACAGCAGCGCCATAAGCAACTGCCTCATCTGGGTTGATACCACGAGATGGTTCT 14630 Query 183312 TTGCCATTAAAAAATTC--TGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 || ||||| || || || ||| | | ||| || | ||| || || | ||| ||||||| Sbjct 14631 TTTCCATTGAAGAAATCCTTGATA--AGTTGCTGCACTTTGGGGATGCGAGTGGAACCAC 14688 Query 183370 CGACTAATACTACTTCATCGATATTACT-TTTACTAATTTGTGAATCTTTTAAAACTTTT 183428 |||||| ||| | |||| || | || ||| ||| | |||||||| |||||||||| Sbjct 14689 CGACTAGTACAATCTCAT-GAACCTGCTCTTTCTTAAGATCTGAATCTTCTAAAACTTTT 14747 Query 183429 TCAACAGG 183436 | ||||| Sbjct 14748 TGCACAGG 14755 >seq108 Length=252160 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || |||||||| || ||||||||||||||||| || || || || ||| Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || |||| ||||||| || || || ||||||| |||||| || || || Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| || || || |||||||| || |||||||||||||| ||||| || || |||||| Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||||| | || || || || || | || ||||| || || Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCAGTGAGA 244944 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || ||||||||||||||||| Sbjct 244943 GTCTTTACAAAAATCTGCAT 244924 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || |||||||| || |||||||||||||| ||||| || || || ||| Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || |||| ||||| | || || || || || | ||||| || || || Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 244326 GTCTTCACGAAGATCTGCAT 244307 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| || || || |||||||| || |||||||||||||| ||||| || || || ||| Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244696 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || |||| ||||| | || || || || || | ||||| || || || Sbjct 244695 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244636 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 244635 GTCTTCACGAAGATCTGCAT 244616 >seq822 Length=101035 Score = 116 bits (128), Expect = 1e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || || | |||||||| || || || ||||||||||||||||| || Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| || | ||| ||||| || |||| |||||||| ||| Sbjct 45617 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45558 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| || |||||| Sbjct 45557 AGAGTTTTCACAAAGATTTGCATT 45534 Score = 109 bits (120), Expect = 2e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || | ||| |||||||| || || ||||| ||||||||||| ||||| Sbjct 47215 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTTT 47156 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | || || | |||||||| | ||| | |||||||| || Sbjct 47155 GTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGTA 47096 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||||||||| |||||||| Sbjct 47095 AGCGTTTTTACAAATATCTGCAT 47073 Score = 107 bits (118), Expect = 6e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || || | ||||||||||| || || || || || |||||||| || Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| || | ||| ||||| || |||| |||||||| ||| Sbjct 45917 GCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGTT 45858 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| || |||||| Sbjct 45857 AGAGTTTTCACAAAGATTTGCATT 45834 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || || | ||||||||||| || ||||| || |||||||| || || Sbjct 45376 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 45317 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| || | ||| || || ||||| | || || || || Sbjct 45316 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTGCCAGTA 45257 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| ||||| || ||||| Sbjct 45256 AGCGTTTTCACAAAGATTTGCAT 45234 >seq2031 Length=37572 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| |||||||||||||||||||| ||||| || || ||||| || || || || ||| Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||| ||||| ||||| || | || ||||| || || Sbjct 5138 TTAACATTTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAGA 5197 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||| ||||| Sbjct 5198 GTCTTCACAAAAATTTGCAT 5217 >seq1039 Length=83987 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 349519 AAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGC 349578 |||||| || || || || |||||| | ||||| | || |||||||| ||||| Sbjct 42632 AAAACAGTTCGCCCCGGAGGAGATTTCAGCTATGGTGCTGACCAAGATGAAGGAGATTGC 42691 Query 349579 TGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAA 349638 || ||||| | || || ||| | ||||| || | ||||| || ||||| ||||| Sbjct 42692 CGAGTCATATCTTGGCAAAGAAGTGAAGGATGCAGTAGTCACTGTGCCTGCCTACTTTAA 42751 Query 349639 TGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAG 349698 |||||| ||||| || ||||||||||| || | ||||| || | |||||| | | Sbjct 42752 TGATGCTCAGCGACAAGCCACAAAAGATGCCGGAACGATTGCTGGACTGAATGTTGTTCG 42811 Query 349699 AATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||| || || ||||| || || || || || || || ||||| || |||| Sbjct 42812 AATCATCAACGAACCAACCGCGGCGGCCATCGCTTACGGGCTGGACAAAA 42861 Score = 89.7 bits (98), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 ||||||| |||||||||||||| || ||||||||||| ||||| || ||| || | Sbjct 43634 CAGCTTGTACAGCTGCACCATAGGCCACAGCTTCATCGGGGTTGATGCCACGCGACGGCT 43575 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| ||||| ||| || | ||| |||| ||| ||||| | || || || | Sbjct 43574 CCTTCCCATTGAAAAACTCTTTAATTAGTTGCTGAACTTTAGGAATACGGGTCGACCCTC 43515 Query 183370 CGACTAATACTACTTCATCGA--TATTACTTTTACTAATTTGTGAATCTTTTAAAACTTT 183427 |||| || || | |||| | | || ||| | ||| | || |||| || |||||| Sbjct 43514 CGACCAAAACAATCTCATGTACGTCTTCCTTCT--TAAGATCAGAGTCTTCTAGAACTTT 43457 Query 183428 TT 183429 || Sbjct 43456 TT 43455 >seq274 Length=180809 Score = 84.2 bits (92), Expect = 7e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 54774 GTAATCCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAG 54833 || ||||||| | | || || |||||| | ||| |||||| | || |||||||||| Sbjct 53282 GTGATCCACCGGCTCAATGCTCCGCTGGACCAGTAGGCGATGATCTGTTCCATTGGCAAG 53341 Query 54834 CAACAATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTG 54893 | ||||| |||||||| ||| | || |||||||| || | ||| | | || Sbjct 53342 CTACAATCATGGGACCTCCAGAATCACCATATCAAGGAGGAGTCTTTTTCCTGACTATAC 53401 Query 54894 ATTTTCCACAAGATTATCCATTTAAACCTCCAAATGTAG 54932 ||||||| ||||||||| || ||||| ||||| |||| Sbjct 53402 ATTTTCCTACAGATTATCCTTTCAAACCACCAAAGGTAG 53440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515130459766352