Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq108 123 3e-23 seq822 118 1e-21 seq2031 111 2e-19 >seq108 Length=252160 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || || ||||| ||||| ||||| ||| | | Sbjct 244924 ATGCAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCT 244983 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| ||||| || || || ||||| |||||||||||||||||| Sbjct 244984 GACACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 245043 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 || || || ||||| ||||||| ||| Sbjct 245044 CAACGACTGATTTTCGCTGGTATGCA 245069 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||||||||| || ||||| || || || ||||| ||| | | Sbjct 244616 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244675 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || || || || || ||||| |||||||||||||||||| Sbjct 244676 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244735 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || || || ||||| |||||| ||| || Sbjct 244736 CAACGACTGATTTTCGCTGGTGAGCTAC 244763 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || ||||| || ||||| ||||| || ||||| ||| || | Sbjct 244000 ATGCAAATTTTCGTGAAAACTCTTACTGGTAAGACAATTACACTCGAGGTCGAGGCATCT 244059 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || || || || ||||| || |||||||||||||||||| Sbjct 244060 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 244119 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || || || || || || ||| ||| Sbjct 244120 CAACGACTGATCTTCGCAGGTGAGC 244144 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||||||||| || ||||| || || || ||||| ||| | | Sbjct 244307 ATGCAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCT 244366 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || || || || || ||||| |||||||||||||||||| Sbjct 244367 GACACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 244426 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || || || || || || ||| ||| Sbjct 244427 CAACGACTGATCTTCGCAGGTGAGC 244451 >seq822 Length=101035 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || |||||||| ||||| || || || || ||||| || | Sbjct 45234 ATGCAAATCTTTGTGAAAACGCTTACTGGCAAAACGATCACACTCGAGGTGGAAGCGTCC 45293 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || || ||||| ||||||||||| || || || ||| Sbjct 45294 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAG 45353 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||| | || ||||| || ||||||| Sbjct 45354 CAGAGACTGATTTTCGCAGGTAAGC 45378 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || ||||| |||||||| || || || | Sbjct 45834 AATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTC 45893 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || ||||||||||||||||| || || || || || Sbjct 45894 GGATACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCTGATCA 45953 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | || ||||| || |||||| Sbjct 45954 GCAGAGGCTTATTTTCGCAGGTAAG 45978 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || ||||| |||||||| || || || | Sbjct 45534 AATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTC 45593 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || |||||||| || || || || || || || || Sbjct 45594 GGATACAATTGAGAATGTCAAGGCGAAGATTCAGGATAAAGAAGGGATCCCACCGGATCA 45653 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 |||| | || ||||| || ||||| Sbjct 45654 GCAGAGGCTGATTTTCGCAGGTAA 45677 >seq2031 Length=37572 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || ||||||||||||||| || Sbjct 5217 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTTGAGGTTGAGGCATCG 5158 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || || || || ||||| ||||| || ||||| || ||| Sbjct 5157 GACACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGTATCCCTCCCGATCAG 5098 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || |||||||| || |||||| Sbjct 5097 CAACGTCTAATCTTCGCTGGT 5077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570264889230080