Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq108 141 2e-28 seq2031 113 1e-19 seq822 95.1 3e-14 >seq108 Length=252160 Score = 141 bits (156), Expect = 2e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||| | || ||||| || || ||||| ||||| ||||||| ||||||||| || |||||| Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||| || || ||||||||||| || |||||||||||||| || ||||| Sbjct 245009 TTAGCTTTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCA 244950 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||||||||| | |||||| Sbjct 244949 GTGAGAGTCTTTACAAAAATCTGCAT 244924 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || ||||| ||||| ||||||| ||||||||| || |||||||| | Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||| ||||| || Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 244326 GTCTTCACGAAGATCTGCAT 244307 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || ||||| ||||| ||||||| |||||| ||||| |||||||| | Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| || || ||||| || || ||| Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000 >seq2031 Length=37572 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || ||||| || || ||||| | || || ||||| || ||||| | Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||||||||| || |||||||| |||||||| || ||||| |||||| Sbjct 5138 TTAACATTTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAGA 5197 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 5198 GTCTTCACAAAAATTTGCAT 5217 >seq822 Length=101035 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| |||||||| || || | || || ||||| || | ||| ||||| |||||||||| Sbjct 45378 GCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCT 45319 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||| ||||| || || || || ||| |||||||| |||||||| || || | Sbjct 45318 TCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTGCCAG 45259 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || || || ||||| | ||||| Sbjct 45258 TAAGCGTTTTCACAAAGATTTGCAT 45234 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| |||||||| ||||| | || || ||||| || | || ||||||||||| ||||| Sbjct 45978 CTTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTT 45919 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || || || || ||| ||| || |||||||| || |||||||| || Sbjct 45918 CGCCTTGACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| | |||||| Sbjct 45858 TAGAGTTTTCACAAAGATTTGCATT 45834 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | || || || || || || | ||| || || |||||||| || Sbjct 47216 CTTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGAT-TT 47158 Query 211031 TTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 |||| ||||| || || |||||||| || ||||| || | || || |||||||||| Sbjct 47157 TTGTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCG 47098 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || || |||||||| | |||||| Sbjct 47097 TAAGCGTTTTTACAAATATCTGCAT 47073 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| || |||||||| |||||||| ||||||||||| |||| |||||| Sbjct 47065 CGAAGACGAAGGACCAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCCGAAAGGGTA 47006 Query 210954 CTTCCATCTTCCAGCTGCTTGCCT 210977 | || ||||| || ||||||||| Sbjct 47005 CGACCGTCTTCAAGTTGCTTGCCT 46982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159057187162160