Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1041 98.7 2e-15
seq108 93.3 1e-13
seq2031 86.0 1e-11
>seq1041
Length=83687
Score = 98.7 bits (108), Expect = 2e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| || ||||||||||| || || ||||| |||||||||||||| || |||||
Sbjct 36243 GAAAATTTGTCCGTCAGTAATAGAAATCACGTTTGTGGGGATATAAGCAGATACGTCACC 36302
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576
||||| || || | ||| || || || || | |||||| |||||||
Sbjct 36303 GGCTTGGGTCTCTATAACTGGCAAAGCAGTCAATGATCCGCCACCAA 36349
>seq108
Length=252160
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
||| | |||||||| || |||||||| ||||| || ||||| |||||||| |||||||||
Sbjct 245069 TGCATACCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATC 245010
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687
|| |||||| || |||||||| || | || || || | ||||| || || ||
Sbjct 245009 TTAGCTTTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCA 244950
Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713
|| | ||| |||| || | |||||
Sbjct 244949 GTGAGAGTCTTTACAAAAATCTGCAT 244924
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| |||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| || || ||||| || | || || || | || || ||||| || || | |
Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| |||||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| || || ||||| || | || || || | ||||| ||||| ||||| |
Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327
Query 225694 GTTTTTATGAACACTTGCAT 225713
|| || | ||| | |||||
Sbjct 244326 GTCTTCACGAAGATCTGCAT 244307
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|||||||| || |||||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244696
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| || || ||||| || | || || || | ||||| ||||| ||||| |
Sbjct 244695 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244636
Query 225694 GTTTTTATGAACACTTGCAT 225713
|| || | ||| | |||||
Sbjct 244635 GTCTTCACGAAGATCTGCAT 244616
>seq2031
Length=37572
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| || ||||| || ||||| || ||||| || |||||||| |||||
Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| ||| |||||||||||| || | || || || | ||||| || || || || | |
Sbjct 5138 TTAACATTTTCGATGGTGTCCGATGCCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAGA 5197
Query 225694 GTTTTTATGAACACTTGCAT 225713
|| || | || | ||||||
Sbjct 5198 GTCTTCACAAAAATTTGCAT 5217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192433656910496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |