Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq108 122 2e-22 seq822 84.2 5e-11 >seq108 Length=252160 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||| Sbjct 244446 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244387 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 244386 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244327 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 244326 GTCTTCACGAAGATCTGCAT 244307 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || || |||| ||||| ||||| ||||| || ||||| ||||||||||| ||| Sbjct 244755 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCT 244696 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 244695 TTCACGTTCTCTATCGTGTCAGAAGCCTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGC 244636 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 244635 GTCTTCACGAAGATCTGCAT 244616 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| || || ||||| ||||| || || |||||||| || | | Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || || |||| ||||| ||||| ||||| || ||||| ||||||||||| ||| Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || || ||||| ||||||||||| || || || || | | Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCAGTGAGA 244944 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || |||||||| Sbjct 244943 GTCTTTACAAAAATCTGCAT 244924 >seq822 Length=101035 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || ||||||||||| || ||||| || || || | || || || ||||| ||||| Sbjct 45944 GGGATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTATCCGAGGCTTCC 45885 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| || ||||| || || | ||| || || || || |||||| Sbjct 45884 ACTTCGAGAGTAATGGTCTTTCCAGTTAGAGTTTTCACAAAGATTTGCATT 45834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046653581967136