Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq108 134 3e-26 seq2031 125 2e-23 seq822 113 1e-19 >seq108 Length=252160 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||||| || || || || || || |||||||| || || ||| Sbjct 244003 CAAATTTTCGTGAAAACTCTTACTGGTAAGACAATTACACTCGAGGTCGAGGCATCTGAC 244062 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||| || |||||||||||||| ||||| ||||||||| Sbjct 244063 ACGATAGAGAACGTGAAAGCCAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAA 244122 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 244123 CGACTGATCTTCGCAGG 244139 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || |||||||| |||||||| ||||| |||||||| || || ||| Sbjct 244927 CAGATTTTTGTAAAGACTCTCACTGGAAAAACTATCACTCTCGAGGTCGAGGCGTCTGAC 244986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| || || || |||||||| ||||| ||||||||| Sbjct 244987 ACCATTGAGAATGTGAAAGCTAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAA 245046 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || ||||| || Sbjct 245047 CGACTGATTTTCGCTGG 245063 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 244310 CAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCTGAC 244369 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||| || || || |||||||| ||||| ||||||||| Sbjct 244370 ACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAA 244429 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 244430 CGACTGATCTTCGCAGG 244446 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 244619 CAGATCTTCGTGAAGACGCTTACGGGGAAGACCATCACCCTCGAGGTCGAGGCTTCTGAC 244678 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||| || || || |||||||| ||||| ||||||||| Sbjct 244679 ACGATAGAGAACGTGAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAA 244738 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || ||||| || Sbjct 244739 CGACTGATTTTCGCTGG 244755 >seq2031 Length=37572 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||| |||||||| ||||| || ||||| || || ||| Sbjct 5214 CAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTTGAGGTTGAGGCATCGGAC 5155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||| || |||||||| || |||||||| || |||||| Sbjct 5154 ACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGTATCCCTCCCGATCAGCAA 5095 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 5094 CGTCTAATCTTCGCTGG 5078 >seq822 Length=101035 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || ||||| || || || ||||| |||||| ||| || Sbjct 45538 CAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTCGGAT 45597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 45598 ACAATTGAGAATGTCAAGGCGAAGATTCAGGATAAAGAAGGGATCCCACCGGATCAGCAG 45657 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || || ||||| || || Sbjct 45658 AGGCTGATTTTCGCAGGTAA 45677 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || ||||| || || || ||||| |||||| ||| || Sbjct 45838 CAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTCGGAT 45897 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| |||||||||||||| || || ||||| || || ||||| Sbjct 45898 ACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCTGATCAGCAG 45957 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | ||||| ||||| || || Sbjct 45958 AGGCTTATTTTCGCAGGTAA 45977 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || ||||||||||| |||||||||||| || || Sbjct 45237 CAAATCTTTGTGAAAACGCTTACTGGCAAAACGATCACACTCGAGGTGGAAGCGTCCGAT 45296 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || || |||||||| || || ||||| Sbjct 45297 ACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAGCAG 45356 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| || ||||| || || Sbjct 45357 AGACTGATTTTCGCAGGTAA 45376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203632740806496