Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5982 102 1e-16 seq31693 87.8 2e-12 seq13514 87.8 2e-12 >seq5982 Length=3431 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 54491 TCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 54550 || ||||||| || ||||| || ||||||||| |||||||||||||| |||| ||| Sbjct 1867 TCAATAGCTGCATCGATATCTTCTTTATGAATTCCGACTGCGACACGCATAAACAAATGC 1808 Query 54551 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTA 54610 || ||||||||||| | ||| | || | ||| || || ||||| ||||| Sbjct 1807 TGCGGTCTTTCAACAGGCACACCGTTCAACTTGATCAAATACGAACGCTCCAATGTTTTG 1748 Query 54611 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 ||||||||||| || | |||||||| || |||| || || ||| |||||| Sbjct 1747 AAACCAAAATACGTGAACGAAAAGTCACGGTCGTGAACGATCCTTGAATTGAGT 1694 >seq31693 Length=667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 |||||| || | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 518 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGA- 460 Query 53209 AGAC-TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || | || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 459 AGCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGA 400 Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 53327 ||| || | || |||| || | |||||| || || | ||||| | || ||| Sbjct 399 GACTGTTACGAACACCGAATTTCGCGATTTTCGCTCGAAGTGAATCCCAGTCGCACTGAT 340 Query 53328 CCGACGG 53334 ||| ||| Sbjct 339 CCGTCGG 333 >seq13514 Length=1612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 |||||| || | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 1463 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGA- 1405 Query 53209 AGAC-TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || | || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 1404 AGCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGA 1345 Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 53327 ||| || | || |||| || | |||||| || || | ||||| | || ||| Sbjct 1344 GACTGTTACGAACACCGAATTTCGCGATTTTCGCTCGAAGTGAATCCCAGTCGCACTGAT 1285 Query 53328 CCGACGG 53334 ||| ||| Sbjct 1284 CCGTCGG 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593409859052400