Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16 109 6e-19 >seq16 Length=240792 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| | || || || || | Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||| | |||||||||||||| || | ||||| Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAA 42246 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| |||||||| || || |||| ||||||||| |||||| ||| Sbjct 42247 CAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAAC 42306 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || || |||| || || || ||| Sbjct 42307 ATCCAAAAAGAATCCACTCTCCACCTTGTG 42336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || || |||||||| || || || |||||| |||| || || || | Sbjct 41147 AATGCAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGAGGCTTC 41206 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | || | ||| |||| ||||||||||| ||||| | || || Sbjct 41207 CGATACCATCGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATCCCACCCGATCA 41266 Query 40809 GCAACGACTCATCTACGCGGGCAA 40832 |||||| || |||| ||| || || Sbjct 41267 GCAACGTCTGATCTTCGCTGGTAA 41290 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| || ||||| |||| || || || | Sbjct 40105 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCG 40164 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||||||||| ||||| | || || Sbjct 40165 GACACCATCGAGAACG-TCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCA 40223 Query 40809 GCAACGACTCATCTACGCGGG 40829 |||||| || |||| ||| || Sbjct 40224 GCAACGTCTGATCTTCGCTGG 40244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514948677718800