Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16 102 7e-17 seq739 82.4 7e-11 >seq16 Length=240792 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || |||||||| ||||| || ||| | ||||| || || Sbjct 42336 CACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTC 42277 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| ||||| || ||| | ||||||||||| || || || || |||||||| ||||| Sbjct 42276 GAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGAATGCCCTCTTTGTCCTG 42217 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | |||| || |||| ||| ||||| | ||| | ||| || Sbjct 42216 GATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACCTCAAGGGTGATCGTCTT 42157 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 42156 CCCGGTTAGGGTCTTCACGAAGATCTGCATG 42126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| ||||| ||||||||||| || || ||||| ||||| ||| ||| Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTT 41231 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | |||| ||| || | ||| ||||||| ||| | ||| || ||||| Sbjct 41230 GCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTG 41171 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 41170 AGCGTCTTAACAAATATTTGCAT 41148 >seq739 Length=22138 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | ||| || || || || || ||||| ||||| || ||||||| Sbjct 1441 TTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTTT 1382 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | ||||| || |||| |||| || || || | || | |||||||||||| Sbjct 1381 GCCTTGACATTTTCGATTGTATCCGATGCT-TCCACTTCTAGTGTGATCGTTTTGCCGGT 1323 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| ||||| Sbjct 1322 CAGTGTCTTGACGAAAATTTGCAT 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433608306627460