Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5096 95.1 1e-14 seq1608 91.5 2e-13 seq30964 89.7 6e-13 seq1017 89.7 6e-13 >seq5096 Length=3978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 723 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 664 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 663 TACTACCGAGGA 652 >seq1608 Length=10917 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60070 TCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACT 60129 ||||| ||||||||||||| |||||| | ||||||||||| ||||||||||||||||| Sbjct 185 TCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTATACT 126 Query 60130 ACCGAGGA 60137 |||||||| Sbjct 125 ACCGAGGA 118 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG-GCGGACATACTCACCACT 60124 |||| |||| ||||||||||||| |||||| | |||||||| |||| |||||||||||| Sbjct 333 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGCGCGG--ATACTCACCACT 276 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 275 ATACTACCGAGGA 263 >seq30964 Length=683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| |||||| | ||||||||||| |||||||||||||||||| Sbjct 682 CGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTATACTA 623 Query 60131 CCGAGGA 60137 ||||||| Sbjct 622 CCGAGGA 616 >seq1017 Length=16788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| |||||| | ||||||||||| |||||||||||||||||| Sbjct 16093 CGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTATACTA 16152 Query 60131 CCGAGGA 60137 ||||||| Sbjct 16153 CCGAGGA 16159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571517360021400