Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq16 109 5e-19
seq739 96.9 3e-15
seq13514 89.7 5e-13
seq1313 89.7 5e-13
seq5982 86.0 6e-12
>seq16
Length=240792
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || || || ||||||||| | || || || ||||
Sbjct 42126 CATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTC 42185
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| | || || | ||| |||||| || ||| | || || |||||
Sbjct 42186 GGATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCA 42245
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||||| || ||||| |||||||| | |||||| | || | ||| |||||
Sbjct 42246 ACAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAA 42305
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| ||||||||||| ||||| || || || ||
Sbjct 42306 CATCCAAAAAGAATCCACTCTCCACCTTGTGCT 42338
>seq739
Length=22138
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| |||||||||||||| | || || ||| | ||
Sbjct 1299 ATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATCG 1358
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||||| ||||| | ||| ||| ||||||||| | || || |||||
Sbjct 1359 GATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAA 1418
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || |||||||| ||
Sbjct 1419 CAACGTTTGATCTTCGCTGGTAA 1441
>seq13514
Length=1612
Score = 89.7 bits (98), Expect = 5e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
|| ||||| || | ||| || |||||||| ||| | |||| ||| || || |||||
Sbjct 382 GCAATCGACGCCAAATTACAAACGGCCACTTCGGTTGGAGACGAGTATTCGACGATTTCA 323
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || |||||| || || || ||||||||||| | || || || |||||||||
Sbjct 322 GTGCACAGATTGGAGCATTTGATGGTGCCCAAATTCTTTTGATTCGACTTACGATTGCAC 263
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| ||| || |||| ||| || || || ||||||| |||||| | ||| ||| |
Sbjct 262 GCATCTTTATAGACCATATAAGGAACACCAGTCTCGATTTGCGACGTCACGATTGCTTCC 203
Query 23201 CACA 23204
||||
Sbjct 202 CACA 199
>seq1313
Length=13192
Score = 89.7 bits (98), Expect = 5e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057
||| ||||||||||||||||| ||||| || || || ||| |||||||||| || ||||
Sbjct 1277 AGGAATATTCTTTTCGGGCAGTTTTGCAGCTATTTTCTGGTTGAAGAAACGTGGTTTGAT 1218
Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
|| || ||||| |||||||||||||| || | || ||||
Sbjct 1217 GCAAGGATTGACGCAAAGCAACGAGTTGATTTCAAGAGATGAGG 1174
>seq5982
Length=3431
Score = 86.0 bits (94), Expect = 6e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404
|| ||| ||| || |||||||||| ||| | | || |||||| || || ||| ||
Sbjct 3073 ACACGTTGCATGAACAGATCCGGTACCCACAAACCGAAGAACAAGTCACGACAACGCTCC 3014
Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464
||| | ||| |||||||| ||||||||| | || || | |||||||||||| |||
Sbjct 3013 AACTCATCGCCTGTGTTCTTGCGTAAATCCAAATATTCGAAGATGTCCGCATGCCAAGGC 2954
Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496
||||| |||| || || || || || | |||
Sbjct 2953 TCGAGATAAATTGCGAATGCACCAGGACGCTT 2922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445532344779600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |