Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16 109 5e-19 seq739 96.9 3e-15 seq13514 89.7 5e-13 seq1313 89.7 5e-13 seq5982 86.0 6e-12 >seq16 Length=240792 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || ||||||||| | || || || |||| Sbjct 42126 CATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTC 42185 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || | ||| |||||| || ||| | || || ||||| Sbjct 42186 GGATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCA 42245 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||| |||||||| | |||||| | || | ||| ||||| Sbjct 42246 ACAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAA 42305 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| ||||| || || || || Sbjct 42306 CATCCAAAAAGAATCCACTCTCCACCTTGTGCT 42338 >seq739 Length=22138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| |||||||||||||| | || || ||| | || Sbjct 1299 ATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATCG 1358 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | ||| ||| ||||||||| | || || ||||| Sbjct 1359 GATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAA 1418 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || |||||||| || Sbjct 1419 CAACGTTTGATCTTCGCTGGTAA 1441 >seq13514 Length=1612 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || ||||| || | ||| || |||||||| ||| | |||| ||| || || ||||| Sbjct 382 GCAATCGACGCCAAATTACAAACGGCCACTTCGGTTGGAGACGAGTATTCGACGATTTCA 323 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || |||||| || || || ||||||||||| | || || || ||||||||| Sbjct 322 GTGCACAGATTGGAGCATTTGATGGTGCCCAAATTCTTTTGATTCGACTTACGATTGCAC 263 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||| || |||| ||| || || || ||||||| |||||| | ||| ||| | Sbjct 262 GCATCTTTATAGACCATATAAGGAACACCAGTCTCGATTTGCGACGTCACGATTGCTTCC 203 Query 23201 CACA 23204 |||| Sbjct 202 CACA 199 >seq1313 Length=13192 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| ||||||||||||||||| ||||| || || || ||| |||||||||| || |||| Sbjct 1277 AGGAATATTCTTTTCGGGCAGTTTTGCAGCTATTTTCTGGTTGAAGAAACGTGGTTTGAT 1218 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || || ||||| |||||||||||||| || | || |||| Sbjct 1217 GCAAGGATTGACGCAAAGCAACGAGTTGATTTCAAGAGATGAGG 1174 >seq5982 Length=3431 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || ||| ||| || |||||||||| ||| | | || |||||| || || ||| || Sbjct 3073 ACACGTTGCATGAACAGATCCGGTACCCACAAACCGAAGAACAAGTCACGACAACGCTCC 3014 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||| | ||| |||||||| ||||||||| | || || | |||||||||||| ||| Sbjct 3013 AACTCATCGCCTGTGTTCTTGCGTAAATCCAAATATTCGAAGATGTCCGCATGCCAAGGC 2954 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||||| |||| || || || || || | ||| Sbjct 2953 TCGAGATAAATTGCGAATGCACCAGGACGCTT 2922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445532344779600