Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5982 105 8e-18 seq31693 86.0 8e-12 seq13514 86.0 8e-12 >seq5982 Length=3431 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 |||||||||| || ||||| || ||||||||| |||||||||||||| |||| ||| Sbjct 1867 TCAATAGCTGCATCGATATCTTCTTTATGAATTCCGACTGCGACACGCATAAACAAATGC 1808 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 || |||||||||||| ||| | || | ||| || || ||||| ||||| Sbjct 1807 TGCGGTCTTTCAACAGGCACACCGTTCAACTTGATCAAATACGAACGCTCCAATGTTTTG 1748 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||||||||||| || | |||||||| || |||| || || |||||||| Sbjct 1747 AAACCAAAATACGTGAACGAAAAGTCACGGTCGTGAACGATCCTTGAATTGAG 1695 >seq31693 Length=667 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||||||||| | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 518 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGAA 459 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 458 GCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGAG 399 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTT 62536 ||| || | || |||| || | |||||| Sbjct 398 ACTGTTACGAACACCGAATTTCGCGATTTT 369 >seq13514 Length=1612 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||||||||| | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 1463 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGAA 1404 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 1403 GCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGAG 1344 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTT 62536 ||| || | || |||| || | |||||| Sbjct 1343 ACTGTTACGAACACCGAATTTCGCGATTTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629486906396400