Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16 100 3e-16 >seq16 Length=240792 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||||||||||||||||||| || || || |||||||| ||| | || Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCC-TGAATCTT 41232 Query 139682 TGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || ||| | | || | || |||| | ||| ||||| | ||| | |||||| ||||| Sbjct 41231 TGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGT 41172 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || || ||||||||||| Sbjct 41171 GAGCGTCTTAACAAATATTTGCAT 41148 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 |||||| ||||||||||||| ||||| ||||| || ||||| ||||| ||| | || | Sbjct 40583 ACCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCC-TGAATCTTGG 40525 Query 139684 TTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | || | || || | | ||||||||||| ||| | ||||||||| |||| Sbjct 40524 CCTTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCA 40465 Query 139743 ACGTTTTTACGAATATTTGCATAGCT 139768 |||||| ||||| ||||||||| || Sbjct 40464 GCGTTTTAACGAAAATTTGCATACCT 40439 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 ||||||| ||||||||||||||||||| ||||| || || |||||||| |||||| Sbjct 40246 TACCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGG 40187 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||||||||| | || | |||||||| || | Sbjct 40186 CTTTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAA 40127 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 ||||| ||||| ||||||||| Sbjct 40126 GTGTTTTCACGAAAATTTGCATA 40104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || || |||||||| |||||||| ||| Sbjct 42354 GCCTCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGA 42295 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||||||| ||||| || || | || ||||| || || || || || Sbjct 42294 GAGGGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGG 42235 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| |||||| || | | || | || || | | |||||| Sbjct 42234 AATGCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCAC 42175 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||| ||||| | || || ||||| || ||||| Sbjct 42174 CTCAAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| |||| || ||||||||||| || || || ||||| ||||| ||| || Sbjct 41633 TACCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATCTTGG 41574 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||||| | |||||||||| ||| | |||||| ||||| | Sbjct 41573 CTTTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCGGTAA 41514 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 ||| || ||||| || |||||| Sbjct 41513 GCGTCTTAACGAAGATCTGCATA 41491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495803535396000