Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq16 116 9e-21 seq6064 114 3e-20 seq739 95.1 3e-14 >seq16 Length=240792 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | || ||||| || || ||||| ||||| |||||||||||| Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTT 41231 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | ||||||| || || ||||| || || || |||||||| || Sbjct 41230 GCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTG 41171 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || |||||||| |||||| Sbjct 41170 AGCGTCTTAACAAATATTTGCATT 41147 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || || | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | |||||| | || || || || || || |||||||| || || Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| || || ||||||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || || | || ||||| ||||| || || ||||| || || || || ||| Sbjct 40244 CCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGGCT 40185 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | ||| || || || ||||| ||||| |||||||| ||||||||| Sbjct 40184 TTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAAGT 40125 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 40124 GTTTTCACGAAAATTTGCAT 40105 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || || | |||||||| ||||| |||||||| || ||||||||||| || Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | ||||| || || ||||| || || || ||||| ||||| || Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 >seq6064 Length=3385 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | |||||||||||||| || || || ||||| |||||||| Sbjct 168 TTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTTG 227 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||||| | || ||||| || || || |||||||| || Sbjct 228 GCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGTT 287 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||||||||| Sbjct 288 AGGGTCTTGACGAAGATCTGCATTTT 313 >seq739 Length=22138 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 104409 CTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCT 104468 |||||| || ||||| || || | | ||||| || || || || ||||| ||||||| Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCT 1390 Query 104469 GAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 |||| ||||| || |||||||| | ||||| | ||| || |||||||| || || | Sbjct 1389 GAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTT 1330 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || ||||| || || || || |||||| Sbjct 1329 TGCCGGTCAGTGTCTTGACGAAAATTTGCATT 1298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| || || || || || ||||||||||||||||| Sbjct 1782 TTACCAGCAAAGATCAACCGTTGTTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTC 1723 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | ||||| | ||| ||||| | || || || || || || Sbjct 1722 GCCTTTACATTCTCGATTGTATCTGACGCTTCGACCTCCAACGTGATCGTTTTGCCGGTC 1663 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || ||||| Sbjct 1662 AGTGTCTTGACAAAAATTTGCAT 1640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150778729974540