Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5609 199 6e-47 seq9077 194 3e-45 seq2116 159 5e-35 >seq5609 Length=3634 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | ||||| |||||||| ||||||||||| || || || || Sbjct 2712 CGCCAAGCGCCATCGCAAAGTGCTTCGTGATAACATTCAAGGAATCACGAAACCGGCAAT 2771 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||| || || || || | |||| || | |||| ||||||| Sbjct 2772 CCGTCGTTTGGCTCGTCGAGGCGGTGTGAAAAGAATCTCAGGCCTCATCTACGAAGAGAC 2831 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| ||||| ||||||| ||| ||||||| |||||| || |||| || Sbjct 2832 TCGTGGTGTTCTGAAGGTCTTCCTTGAGAATGTTATCCGTGATGCCGTCACCTATTGTGA 2891 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || || |||||| | |||||| ||||||| ||| ||||||||||||| Sbjct 2892 GCACGCAAAGAGGAAAACGGTCACCGCGATGGATGTCGTCTACGCACTGAAACGTCAAGG 2951 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | | || ||||| ||| | ||| Sbjct 2952 CAGAACGCTGTACGGTTTCGGAGGCTAA 2979 >seq9077 Length=2326 Score = 194 bits (214), Expect = 3e-45 Identities = 209/273 (77%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || | || || || |||||||||||||| || || ||| Sbjct 1674 GCGAAGCGTCATCGTAAAGTGCTAAGGGACAATATTCAAGGAATCACCAAACCGGCCATC 1733 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||| || || || |||||| | |||||| | |||| ||||||| Sbjct 1734 CGTCGTTTGGCTCGTCGAGGCGGTGTGAAGCGTATTTCTGGACTCATCTACGAAGAGACG 1793 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| ||| |||||| | || || ||| ||||| | |||||| | ||| |||| | Sbjct 1794 CGTGGTGTCTTGAAGGTGTTTCTTGAGAATGTTATACGCGATGCTGT-CAC-ATACTGTG 1851 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| | |||||| |||| |||||| |||||||||||| Sbjct 1852 AGCACGCGAAACGCAAGACCGTCACTGCAATGGATGTCGTTTATGCACTGAAACGTCAAG 1911 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | | | ||||||||||||| | | ||||| Sbjct 1912 GAAGAACGCTTTATGGTTTTGGTGGCTGATCTT 1944 >seq2116 Length=8653 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| || ||||| ||||| || || Sbjct 2998 CGCAAAGCGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGTATCACAAAGCCCGCAAT 2939 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||| ||| |||||||| | |||| || || | Sbjct 2938 TCGTCGTCTCGCACGTCGTGGTGGTGTCAAACGTATCTCTGGACTCATCTACGAGGAAAC 2879 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| | | ||| |||| ||||| || ||| || Sbjct 2878 CCGTGGTGTACTCAAAGTATTCCTGGAAAACGTGATCCGCGATGCAGTCACCTACTGTGA 2819 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| |||||||| | || || || ||||||| ||||| Sbjct 2818 ACACGCCAAGCGAAAGACCGTCACAGCCATGGATGTGGTGTACGCCCTGAAACGACAAGG 2759 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || ||||| ||| ||||| Sbjct 2758 CAGAACCCTCTACGGTTTCGGAGGTTAA 2731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79036794534465