Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5982 104 3e-17 seq31693 84.2 3e-11 seq13514 84.2 3e-11 >seq5982 Length=3431 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 |||||||||| || ||||| || ||||||||| |||||||||||||| |||| ||| Sbjct 1867 TCAATAGCTGCATCGATATCTTCTTTATGAATTCCGACTGCGACACGCATAAACAAATGC 1808 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 || ||||||||||| | ||| | || | ||| || || ||||| ||||| Sbjct 1807 TGCGGTCTTTCAACAGGCACACCGTTCAACTTGATCAAATACGAACGCTCCAATGTTTTG 1748 Query 63798 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63834 ||||||||||| || | |||||||| || |||| || Sbjct 1747 AAACCAAAATACGTGAACGAAAAGTCACGGTCGTGAA 1711 >seq31693 Length=667 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 |||||| || | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 518 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGAA 459 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 458 GCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGAG 399 Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||| || | || |||| || | |||||| || || | ||||| | || |||| Sbjct 398 ACTGTTACGAACACCGAATTTCGCGATTTTCGCTCGAAGTGAATCCCAGTCGCACTGATC 339 Query 62516 CGACGG 62521 || ||| Sbjct 338 CGTCGG 333 >seq13514 Length=1612 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 |||||| || | ||| || | || | || || || |||||| | ||||||||||| | Sbjct 1463 TACTTGGAAGTTTCCGGAGAGCACGTTTCGCGTATAGATATTAGTCGTATACGGTTCGAA 1404 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| ||||| ||||| || |||||||| || ||||| ||||||| || | Sbjct 1403 GCCTTCGTTATTGCCCAATATTTGGGCGGTTGATGCGGTAGGCATTGGTGCCAGCAGGAG 1344 Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||| || | || |||| || | |||||| || || | ||||| | || |||| Sbjct 1343 ACTGTTACGAACACCGAATTTCGCGATTTTCGCTCGAAGTGAATCCCAGTCGCACTGATC 1284 Query 62516 CGACGG 62521 || ||| Sbjct 1283 CGTCGG 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622620113785800