Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5253 113 3e-20 seq16 89.7 3e-13 >seq5253 Length=3867 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| Sbjct 1590 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCGT 1649 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 1650 GGCCATATTTAGCCTTA 1666 >seq16 Length=240792 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || || || || || ||||||||||||| || | |||||||||||| || ||| | Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 38238 TTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAA 38296 |||||||| | || ||||| | || |||||||| | || || || |||||||| | Sbjct 40873 TTCACATTTTCGATGGTATC-CGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAG 40815 Query 38297 GGTTTTCACGAATATCTGCAT 38317 |||||| ||||| |||||||| Sbjct 40814 GGTTTTGACGAAGATCTGCAT 40794 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 ||||| || || || | | ||| | ||| | || |||||| || ||||| || || Sbjct 42362 AATCAGTAGCCTCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTA 42303 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 || || || | || |||| || | |||||| ||||| || || || || ||||| Sbjct 42302 TAGTCGGAGAGGGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGG 42243 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | || | ||| ||||||||| ||||| ||||||||||| || ||||| | | Sbjct 42242 TCTGGTGGAATGCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATC-CGA 42184 Query 38262 C-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || | || || || || || || | ||| |||||||| ||||||||| Sbjct 42183 CGCCTCCACCTCAAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCATG 42126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334775728491155